Table 2. Global features of Cistanche deserticola plastidome compared to Nicotiana tabacum and other parasitic plants.
Species | Accession no | Size (nt) | Numberof genesa | Number of pseudogenes | Number of tRNAsb | number of genes with introns | Reference |
Rhizanthella gardneri | GQ413967 | 59,190 | 37 | 6 | 9 | 4 | [9] |
Epifagus virginiana | NC_001568 | 70,028 | 53 | 18 | 17 | 4 | [5] |
Cuscuta obtusiflora | NC_009949 | 85,280 | 98 | 1 | 24 | 5 | [7] |
Cuscuta gronovii | AM711639 | 86,744 | 99 | 5 | 24 | 5 | [6] |
Neottia nidus-avis | JF325876 | 92,060 | 74 | 28 | 28 | 8 | [10] |
Cistanche deserticola | KC128846 | 102,657 | 77 | 32 | 30 | 14 | this study |
Cuscuta reflexa | AM711640 | 121,521 | 115 | 4 | 29 | 16 | [6] |
Cuscuta exaltata | NC_009963 | 125,373 | 112 | 8 | 29 | 16 | [7] |
Nicotiana tabacum | NC_001879 | 155,939 | 151 | 1 | 30 | 23 | [68] |
Data in this table came from analyses using sequences on GenBank or plastid chromosomes gene maps in their original report.
Number of genes excluding the pseudogenes. Duplicated genes in the IR regions were counted twice.
Duplicated tRNAs were counted both.