Table 2.
Classification of allele-specific expression (ASE) SNPs responding to Marek’s disease virus (MDV) infection in broilers and layers
|
SNP type |
Broiler |
Layer |
||
|---|---|---|---|---|
| SNPs | Genes | SNPs | Genes | |
| Downstream |
1,073 |
875 |
583 |
524 |
| Exonic |
1,780 |
1,501 |
1,123 |
947 |
| Exonic Splicing |
39 |
38 |
41 |
41 |
| Intergenic |
1,610 |
1,059 |
1,150 |
868 |
| Intronic |
541 |
394 |
913 |
691 |
| ncRNA_exonic |
1 |
1 |
3 |
3 |
| Splicing |
8 |
8 |
7 |
7 |
| Upstream |
94 |
88 |
118 |
109 |
| Upstream:Downstream |
47 |
41 |
41 |
36 |
| UTR’3 |
863 |
694 |
467 |
414 |
| UTR’5 |
74 |
67 |
81 |
77 |
| UTR’3: UTR’5 |
2 |
2 |
1 |
1 |
| Total | 6,132 | 4,768 | 4,528 | 3718 |