Table 3.
Classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus (MDV) infection in common between broilers and layers at the nucleotide position and gene level
|
SNP type |
Nucleotide-level match |
Gene-level match |
|
|---|---|---|---|
| SNPs | Genes | Genes | |
| Downstream |
12 |
11 |
86 |
| Exonic |
18 |
18 |
231 |
| Exonic Splicing |
0 |
0 |
0 |
| Intergenic |
25 |
25 |
301 |
| Intronic |
6 |
6 |
117 |
| ncRNA_exonic |
0 |
0 |
0 |
| Splicing |
0 |
0 |
0 |
| Upstream |
1 |
1 |
9 |
| Upstream:Downstream |
0 |
0 |
2 |
| UTR’3 |
9 |
9 |
101 |
| UTR’5 |
1 |
1 |
3 |
| UTR’3: UTR’5 |
0 |
0 |
0 |
| Total | 72 | 71 | 850 |