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Functional classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus infection from broilers and layers in known genes
|
SNP type |
Broiler |
Layer |
Common |
||||
|---|---|---|---|---|---|---|---|
| SNPs | % of SNPs | Gene | SNPs | % of SNPs | Gene | Gene | |
| Nonsynonymous |
442 |
24.3 |
399 |
317 |
27.3 |
291 |
14 |
| Stop gain |
4 |
0.2 |
4 |
5 |
0.4 |
5 |
0 |
| Stop loss |
2 |
0.1 |
2 |
1 |
0.1 |
1 |
0 |
| Synonymous |
1,370 |
75.4 |
936 |
840 |
72.2 |
735 |
162 |
| Total | 1,818 | 100 | 1,341 | 1,163 | 100 | 1,032 | 176 |
