Table 1.
Counts | Mean length | Total bases | ||
---|---|---|---|---|
de novo assembly (i) |
total reads |
277 725 |
296 |
82 179 685 |
mapped reads |
243 470 |
290 |
70 654 843 |
|
unmapped reads |
34 255 |
336 |
11 524 842 |
|
contigs |
13 104 |
599 |
7 853 262 |
|
R mapped to de novo (ii) |
total reads |
133 574 |
320 |
42 788 130 |
mapped reads |
114 093 |
316 |
36 061 899 |
|
unmapped reads |
19 481 |
345 |
6 726 231 |
|
contigs |
11 965 |
615 |
7 367 368 |
|
S mapped to de novo (iii) | total reads |
144 151 |
273 |
39 391 555 |
mapped reads |
130 008 |
267 |
34 767 476 |
|
unmapped reads |
14 143 |
327 |
4 624 079 |
|
contigs | 10 130 | 626 | 6 350 291 |
(i) contains all reads from this library, (ii) contains all reads over-represented in the resistant branch compared with the susceptible branch and (iii) contains all reads over-represented in the susceptible branch compared with the resistant branch.