Table 4.
Statistical analysis (Fisher’s exact test) of the over or under representation of GO categories in the overS (iii) data set derived from the transcriptome of leaves from susceptible branches of a mosaic Eucalyptus melliodora tree
| GO Term | Name | Type | FDR | p-Value | Over/Under |
|---|---|---|---|---|---|
| GO:0010468 |
regulation of gene expression |
P |
0.01 |
0.00 |
+ |
| GO:0019222 |
regulation of metabolic process |
P |
0.01 |
0.00 |
+ |
| GO:0040029 |
regulation of gene expression, epigenetic |
P |
0.01 |
0.00 |
+ |
| GO:0060255 |
regulation of macromolecule metabolic process |
P |
0.01 |
0.00 |
+ |
| GO:0005840 |
ribosome |
C |
0.01 |
0.00 |
- |
| GO:0030529 |
ribonucleoprotein complex |
C |
0.01 |
0.00 |
- |
| GO:0005198 |
structural molecule activity |
F |
0.03 |
0.00 |
- |
| GO:0005488 |
binding |
F |
0.03 |
0.00 |
+ |
| GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
P |
0.04 |
0.00 |
+ |
| GO:0006807 |
nitrogen compound metabolic process |
P |
0.04 |
0.00 |
+ |
| GO:0034641 |
cellular nitrogen compound metabolic process |
P |
0.04 |
0.00 |
+ |
| GO:0009719 |
response to endogenous stimulus |
P |
0.06 |
0.00 |
+ |
| GO:0000166 |
nucleotide binding |
F |
0.07 |
0.00 |
+ |
| GO:0043226 |
organelle |
C |
0.07 |
0.00 |
- |
| GO:0005622 |
intracellular |
C |
0.09 |
0.01 |
- |
| GO:0043229 |
intracellular organelle |
C |
0.09 |
0.01 |
- |
| GO:0044444 |
cytoplasmic part |
C |
0.10 |
0.01 |
- |
| GO:0006412 |
translation |
P |
0.10 |
0.01 |
- |
| GO:0009059 |
macromolecule biosynthetic process |
P |
0.10 |
0.01 |
- |
| GO:0034645 |
cellular macromolecule biosynthetic process |
P |
0.10 |
0.01 |
- |
| GO:0044249 |
cellular biosynthetic process |
P |
0.10 |
0.01 |
- |
| GO:0044424 |
intracellular part |
C |
0.12 |
0.01 |
- |
| GO:0005737 |
cytoplasm |
C |
0.13 |
0.01 |
- |
| GO:0044464 |
cell part |
C |
0.13 |
0.01 |
- |
| GO:0043412 |
macromolecule modification |
P |
0.15 |
0.02 |
+ |
| GO:0016788 |
hydrolase activity, acting on ester bonds |
F |
0.15 |
0.02 |
+ |
| GO:0016301 |
kinase activity |
F |
0.15 |
0.03 |
+ |
| GO:0016772 |
transferase activity, transferring phosphorus-containing groups |
F |
0.15 |
0.03 |
+ |
| GO:0003774 |
motor activity |
F |
0.15 |
0.03 |
+ |
| GO:0016462 |
pyrophosphatase activity |
F |
0.15 |
0.03 |
+ |
| GO:0016817 |
hydrolase activity, acting on acid anhydrides |
F |
0.15 |
0.03 |
+ |
| GO:0016818 |
hydrolase activity, acting on acid anhydrides, |
F |
0.15 |
0.03 |
+ |
| GO:0017111 |
nucleoside-triphosphatase activity |
F |
0.15 |
0.03 |
+ |
| GO:0032501 |
multicellular organismal process |
P |
0.15 |
0.03 |
+ |
| GO:0043227 |
membrane-bounded organelle |
C |
0.15 |
0.02 |
- |
| GO:0043231 |
intracellular membrane-bounded organelle |
C |
0.15 |
0.02 |
- |
| GO:0043228 |
non-membrane-bounded organelle |
C |
0.15 |
0.03 |
- |
| GO:0043232 |
intracellular non-membrane-bounded organelle |
C |
0.15 |
0.03 |
- |
| GO:0006464 |
protein modification process |
P |
0.19 |
0.03 |
+ |
| GO:0007275 |
multicellular organismal development |
P |
0.20 |
0.04 |
+ |
| GO:0004721 |
phosphoprotein phosphatase activity |
F |
0.20 |
0.04 |
+ |
| GO:0016791 |
phosphatase activity |
F |
0.20 |
0.04 |
+ |
| GO:0042578 |
phosphoric ester hydrolase activity |
F |
0.20 |
0.04 |
+ |
| GO:0032991 |
macromolecular complex |
C |
0.20 |
0.04 |
- |
| GO:0050896 |
response to stimulus |
P |
0.21 |
0.04 |
+ |
| GO:0032502 |
developmental process |
P |
0.21 |
0.05 |
+ |
| GO:0009058 | biosynthetic process | P | 0.21 | 0.04 | - |
Type refers to the GO category type: F = molecular function, P = biological processes and C = cellular component. FDR refers to the false discovery rate (FDR)- corrected p-value and the thick horizontal line shows a significance level of 0.05 FDR. p-Value refers to single test p-value. In the over/under column, + signifies over-represented categories and – signifies under-represented categories when compared to the reference data set (i).