Table 1.
Spectral counting software
| Crux | APEX | emPAI Calc | PepC | ProteoQ | Scaffold | |
|---|---|---|---|---|---|---|
|
Metrics |
|
|||||
|
Provided |
|
|||||
| SIN |
X |
|
|
|
|
|
| emPAI |
X |
|
X |
|
|
|
| NSAF |
X |
|
|
|
|
|
| dNSAF |
X |
|
|
|
|
|
| Raw |
X |
|
|
|
X |
X |
| Other |
|
X |
|
X |
X |
|
|
Other |
|
|||||
|
Features |
|
|||||
| ParsimonyAnalysis |
X |
|
|
|
X |
X |
| Peptide-LevelCounting |
X |
|
|
|
|
|
| Free |
X |
X |
X |
X |
|
|
| Opensource |
X |
X |
|
X |
|
|
| Web Interface |
|
|
X |
X |
|
|
| Graphical userinterface |
|
X |
|
|
X |
X |
| Scriptable | X | X | X | |||
This table summarizes the features of various spectral counting software methods.