Table 4.
Novel effector candidates identified by searching for genes with a mimp IR in their promoter
|
Gene description |
Mimp in promoter1 |
SP2 |
Protein in xylem sap |
|||
|---|---|---|---|---|---|---|
| Encoded protein | Chromosome | FOXG or genomic location | Identified in search | Distance mimp IR-ATG [bp] | ||
|
SIX genes |
||||||
| Six1 (corrected) |
14 |
FOXG_16418 (incorrect) |
no3 |
1192 |
yes |
yes |
| Six2 |
14 |
FOXG_16416 |
yes |
211 |
yes |
yes |
| Six3 |
14 |
FOXG_16398 |
yes |
232 |
yes |
yes |
| Six5 |
14 |
SC36[3273-3407] |
no4 |
1132 |
yes |
yes |
| Six6 |
14 |
FOXG_14246 |
yes |
668 |
yes |
yes |
| Six7 |
14 |
SC51[65216-65875] |
no |
(sequence gap) |
yes |
yes |
|
Novel effector candidates |
||||||
| Six8 |
14, 14 |
FOXG_17445, FOXG_16464 |
no4 |
109 |
yes |
yes |
| Six8b |
3, 3, 6, 6 |
SC18[1122404-122824],SC18[862700-863120], SC41 [221648-222068], SC21[219855-220275] |
yes |
1026, 1972 |
yes |
no |
| Six9 |
14 |
FOXG_14223 |
yes |
249 |
yes |
yes |
| Six10 |
14 |
FOXG_17457 |
no4 |
384 |
yes |
yes |
| Six11 |
14 |
SC22[806692-807024] |
yes |
322, 852 |
yes |
yes |
| Six12 |
14 |
SC51[62415-62753] |
no5 |
837 |
no |
yes |
| Six13 |
6, 6 |
FOXG_17131 (5' extended), SC42[126863-127192] |
yes |
1971 |
yes |
yes |
| Six14 |
14 |
SC36[135867-136180] |
yes |
211, 258, 681, 1215 |
yes |
yes |
| FoAve1 |
14 |
SC36[201730-202101] |
yes |
788 |
yes |
no |
| conserved secreted protein |
14 |
FOXG_14254 |
yes |
1312 |
yes |
no |
| secreted protein |
15 |
SC38[202206-202388] |
yes |
1717 |
yes |
no |
| secreted protein |
14 |
SC51[127492-128836] |
yes |
1236 |
yes |
no |
|
Secreted enzymes |
||||||
| Orx1 |
14 |
FOXG_14258;FOXG_14236 |
yes |
554 |
yes |
yes |
| catalase-peroxidase |
6, 14 |
FOXG_17130, FOXG_17460 |
yes |
921 |
yes |
yes |
| metalloprotease | 3, 6 | SC47[78991-79260], SC42[41025-41294] | yes | 394 | yes | no |
1 distance between the mimp IR and the ATG start codon.
2 predicted signal peptide.
3 not identified because of a sequence gap in the genome assembly.
4 not identified because of a short first exon.
5 not identified due to absence of a signal peptide.