Table 1.
Enzyme | Species | Pathway | Oligomeric Stateb | Substrate(s) | Pub. Year(s) | PDB #sc | Active Site Cocrystalsd |
---|---|---|---|---|---|---|---|
Arrangement A DHs | |||||||
FabA | E. coli | FAS | D | (R)-3-HODec-ACP | 1996 | 1MKA | none |
1MKB | 3-decynoyl-SNAC | ||||||
PaFabZ | P. aeruginosa | FAS | H1 | (R)-3-HO-acyl-ACPs | 2004 | 1U1Z | none |
PfFabZ | P. falciparum | FAS | H1 | (R)-3-HO-acyl-ACPs | 2005 | 1Z6B | none |
2006 | 1ZHG | none | |||||
2007 | 2OKH | none | |||||
2OKI | none | ||||||
2011 | 3AZ8 | NAS21 | |||||
3AZ9 | NAS91 | ||||||
3AZA | NAS91-10 | ||||||
3AZB | NAS91-11 | ||||||
HpFabZ | H. pylori | FAS | H1 | (R)-3-HO-acyl-ACPs | 2008 | 2GLL | chloride |
2GLM | none | ||||||
2GLP | none | ||||||
2GLV* | none | ||||||
2008 | 3B7J | none | |||||
2008 | 3CF8 | none | |||||
3CF9 | none | ||||||
3D04 | none | ||||||
2009 | 3ED0 | none | |||||
2009 | 3DOY | none | |||||
3DOZ | none | ||||||
3DP0 | none | ||||||
3DP1 | none | ||||||
3DP2 | none | ||||||
3DP3 | none | ||||||
CjFabZ | C. jejunti | FAS | H1 | (R)-3-HO-acyl-ACPs | 2009 | 3D6X | none |
DEBS DH | S. erythraea | Modular PKS | DdhC | 2008 | 3EL6 | none | |
CurF DH | L. majuscula | Modular PKS | DdhC | 2010 | 3KG6 | none | |
CurH DH | L. majuscula | Modular PKS | DdhC | 2010 | 3KG7 | none | |
CurJ DH | L. majuscula | Modular PKS | DdhC | 2010 | 3KG8 | none | |
CurK DH | L. majuscula | Modular PKS | DdhC | 2010 | 3KG9 | none | |
FAS DH | S. scrofa | Animal FAS | DdhD | (R)-3-HO-acyl-ACPs | 2008 | 2VZ8 | none |
2VZ9 | none | ||||||
| |||||||
Arrangement J DHs & Hydratases | |||||||
FAS DH | T. lanuginosus | Fungal FAS | Mth | (R)-3-HO-acyl-ACPs | 2007 | 2UVA | none |
FAS DH | S. cerevisiae | Fungal FAS | Mth | (R)-3-HO-acyl-ACPs | 2007 | 2UV8 | none |
2007 | 2PFF | none | |||||
PhaJ | A. caviae | PHA Biosynthesis | D | 2003 | 1IQ6 | none | |
MFE-2 Hydratase 2 | C. tropicalis | β-Oxidation | DdhA | 2004 | 1PN2 | none | |
1PN4* | (R)-3-HO-Dec-CoA | ||||||
MFE-2 Hydratase 2 | H. sapiens | β-Oxidation | DdhA | 2005 | 1S9C | none | |
MFE-2 Hydratase 2 | D. melanogaster | β-Oxidation | DdhA | 2011 | 3OML | none |
Abbreviations used: FAS, fatty acid synthesis; PKS, polyketide synthesis; PHA, polyhydroxyalkanoate; Dec, decanoyl; CoA, coenzyme A; ACP, acyl carrier protein.
Terms defined as in Pidugu, et al.: D, dimer; H1, trimer of dimers; DdhA, DHD dimer corresponding to a face-to-face dimer of dimers (TA). Terms introduced in this review: DdhC & DdhD, DHD side-by-side dimers; Mth, THD monomer.
An asterisk indicates a mutant.
Buffers and/or salt ions are not necessarily noted nor are inhibitors not bound within the active site. The NAS compounds are a series of competitive inhibitors designed for PfFabZ.