Table 4.
Measures for seven generalization queries
| (A) Lipids | GO:0044242 | GO:0008299 | GO:0008654 | |||||
|---|---|---|---|---|---|---|---|---|
| Tool |
GPM |
G2P |
GPM |
G2P |
GPM |
G2P |
|
|
| (a) Number of results |
4 |
26 |
9 |
16 |
25 |
27 |
|
|
| (b) Relevant among (a) |
3 |
20 |
1 |
2 |
5 |
11 |
|
|
| (c) Total relevant |
22 |
3 |
12 |
|
|
|||
| (d) Common results |
1 |
2 |
5 |
|
|
|||
| (e) Relevant among (d) |
1 |
0 |
4 |
|
|
|||
| Precision |
0.750 |
0.769 |
0.111 |
0.125 |
0.200 |
0.407 |
|
|
| Relative Recall |
0.136 |
0.864 |
0.333 |
0.667 |
0.417 |
0.917 |
|
|
| F-score |
0.231 |
0.814 |
0.167 |
0.211 |
0.270 |
0.564 |
|
|
|
(B) Other |
GO:0050658 |
GO:0033013 |
GO:0006805 |
GO:0048284 |
||||
| Tool |
GPM |
G2P |
GPM |
G2P |
GPM |
G2P |
GPM |
G2P |
| (a) Number of results |
25 |
10 |
15 |
19 |
30 |
23 |
24 |
17 |
| (b) Relevant among (a) |
7 |
2 |
3 |
3 |
17 |
14 |
10 |
9 |
| (c) Total relevant |
9 |
6 |
26 |
16 |
||||
| (d) Common results |
3 |
6 |
7 |
8 |
||||
| (e) Relevant among (d) |
1 |
2 |
4 |
4 |
||||
| Precision |
0.280 |
0.200 |
0.200 |
0.158 |
0.567 |
0.609 |
0.417 |
0.529 |
| Relative Recall |
0.875 |
0.250 |
0.600 |
0.600 |
0.680 |
0.560 |
0.625 |
0.563 |
| F-score | 0.424 | 0.222 | 0.300 | 0.250 | 0.618 | 0.583 | 0.500 | 0.545 |
Results’ sets sizes and values of precision, relative recall and F-score using GoPubMed and GO2PUB search tools for seven random queries: three lipid-related queries (part A) and four queries about other topics (part B). Values of precision, relative recall and F-score are calculated from (a), (b) and (c) lines. (d) and (e) lines provide GO2PUB and GoPubMed common results’ sets sizes and the number of common relevant results.