Table 1.
Categorization and abundance of tags
| Summary | F-1 | F-2 | F-3 | S-1 | S-2 | S-3 | |
|---|---|---|---|---|---|---|---|
| Raw data |
Total |
6057743 |
6106800 |
5907794 |
5926547 |
5891017 |
6042253 |
| |
Distinct tags |
466231 |
457518 |
389247 |
252111 |
421049 |
345292 |
| Clean tags |
Total number |
5766711 |
5928700 |
5696273 |
5849242 |
5661517 |
5871546 |
| |
Distinct tag numbers |
195469 |
282106 |
180025 |
181205 |
209697 |
177594 |
| All tag mapping to gene |
Total number |
4418440 |
4590068 |
4300473 |
4207316 |
4201776 |
4060397 |
| |
Total % of clean tags |
76.62% |
77.42% |
75.50% |
71.93% |
74.22% |
69.15% |
| |
Distinct tag numbers |
106159 |
163814 |
105324 |
79790 |
105946 |
92188 |
| |
Distinct tag % of clean tags |
54.31% |
58.07% |
58.51% |
44.03% |
50.52% |
51.91% |
| Unambiguous Tag mapping to gene |
Total number |
2216772 |
2193183 |
2227360 |
1948213 |
2138430 |
2192477 |
| |
Total % of clean tags |
38.44% |
36.99% |
39.10% |
33.31% |
37.77% |
37.34% |
| |
Distinct tag numbers |
72551 |
111516 |
71585 |
51219 |
72232 |
63400 |
| |
Distinct Tag % of clean tags |
37.12% |
39.53% |
39.76% |
28.27% |
34.45% |
35.70% |
| All tag-mapped genes |
Number |
66081 |
77376 |
66172 |
56741 |
67267 |
62364 |
| |
% of ref genes |
56.71% |
66.41% |
56.79% |
48.70% |
57.73% |
53.52% |
| Unambiguous tag-mapped genes |
Number |
34451 |
42940 |
33937 |
26642 |
35072 |
31397 |
| |
% of ref genes |
29.57% |
36.85% |
29.13% |
22.86% |
30.10% |
26.95% |
| Unknown tags |
Total number |
1348271 |
1338632 |
1395800 |
1641926 |
1459741 |
1811149 |
| |
Total % of clean tags |
23.38% |
22.58% |
24.50% |
28.07% |
25.78% |
30.85% |
| |
Distinct tag numbers |
89310 |
118292 |
74701 |
101415 |
103751 |
85406 |
| Distinct tag % of clean tags | 45.69% | 41.93% | 41.49% | 55.97% | 49.48% | 48.09% |