Table 3.

SNPs reaching alpha levels of significance of P<1.97*10⁻⁵ in GOLDN and q-value (Q)<.05 in Caucasians in MESA in SNP-phenotype associations with VLDL, LDL and HDL diameters

				GOLDN			MESA
				Caucasians			Caucasians				Hispanics				AA				Chinese
Marker	Chr	Position	CA2	β	P	MAF	β	P	Q	MAF	β	P	Q	MAF	β	P	Q	MAF	β	P	MAF
VLDL diameter / APOB gene1
rs10184054	2	21057374	G(C)	.04	1.9*10−8	0.23	.02	.001	.01	0.24	.02	.001	0.1	0.26	.005	0.47	-	0.15	.01	0.15	0.72
rs6544366	2	21057522	T(G)	.04	1.9*10−8	0.25	.02	.001	.01	0.23	.02	.001	0.1	0.26	.006	0.39	-	0.15	.01	0.22	0.27
rs6728178	2	21193946	G(A)	.04	1.9*10−8	0.23	−.02	.001	.01	0.23	−.02	.001	0.1	0.26	.0002	0.97	-	0.20	−.01	0.14	0.28
rs7557067	2	21208211	G(A)	.04	1.7*10−8	0.25	.02	.001	.01	0.24	.02	.001	0.1	0.26	.005	0.49	-	0.15	.01	0.14	0.29
HDL diameter / LIPC gene
rs261338	15	56522297	G(A)	.13	1.7*10−05	0.16	.01	.002	.01	0.17	−.00	.09	-	0.14	−.001	0.65	-	0.22	-	-	0.05
rs473224	15	56524633	T(G)	−.13	1.2*10−05	0.15	−.01	9.8*10−05	.01	0.17	.004	.13	-	0.10	−.0002	0.94	-	0.13	-	-	0.03
rs488490	15	56524953	C(A)	−.13	1.3*10−05	0.15	−.01	.0001	.01	0.17	.004	.13	-	0.10	.0004	0.87	-	0.13	-	-	0.03

¹SNP within a 50 kb window of the listed gene

²CA = Coded allele; non-coded allele in brackets