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. Author manuscript; available in PMC: 2013 Sep 7.
Published in final edited form as: J Mol Biol. 2012 May 19;422(1):124–144. doi: 10.1016/j.jmb.2012.05.022

Table 1.

Experimental data sets used in this work and models derived from them

Data set Description Receptor-binding models
derived from data
SPOT substitution arrays 170 one-residue variants of Bim BH3 (binding to all 5 receptors), 222 one-residue variants of Bad BH3 (binding Bcl-xL) and Noxa BH3 (binding Mcl-1) Bcl-xL: PSSMSPOTX_Bim, PSSMSPOTX_Bad
Mcl-1: PSSMSPOTM_Bim, PSSMSPOTM_Noxa
Bcl-2: PSSMSPOT2_Bim, Bcl-w: PSSMSPOTW_Bim
Bfl-1: PSSMSPOTF_Bim
SPOT library arrays 359 sequences including 1–5 mutations in Bim BH3 (binding to Mcl-1 and Bcl-xL) N/A
Specific tight binders Conventional sequencing of individual yeast clones assessed for binding to Bcl-xL and Mcl-1: 40 Bcl-xL and 33 Mcl-1-specific sequences N/A
Likely binders Illumina deep sequencing of yeast clones screened for high-affinity binding to receptors Bcl-xL: PSSMDEEPX_AFFIN, Mcl-1: PSSMDEEPM_AFFIN
Bcl-2: PSSMDEEP2_AFFIN, Bcl-w: PSSMDEEPW_AFFIN
Bfl-1: PSSMDEEPF_AFFIN
Likely specific binders Illumina deep sequencing of yeast clones screened for Mcl-1 versus Bcl-xL specific binding and vice versa Bcl-xL: PSSMDEEPX_SPEC, Mcl-1: PSSMDEEPM_SPEC

Mcl-1 and Bcl-xL substitution and library SPOT array data and yeast screening experiments are from Dutta et al.14

N/A - Not applicable.