Table 3.
Genes up-regulated in the tomato pedicel distal region (Dis) compared with the proximal region (Prox)
| |
|
|
|
|
Dis > Prox |
Dis > AZ |
||
|---|---|---|---|---|---|---|---|---|
| Tomato gene ID | Probe ID | Gene name / EST accession number | Arabidopsis homologue | Annotation | Fold change (log2) | p-value | Fold change (log2) | p-value |
|
Transcription factor |
|
|
|
|
|
|
|
|
| Solyc02g089200a |
A_96_P195359 |
TM29 BG734619 |
AT5G15800 |
SEP1 (SEPALLATA1) |
8.8 |
0.004 |
2.4 |
< 0.001 |
| Solyc05g015750a |
A_96_P000181 |
TDR5 AY294330 |
AT1G24260 |
SEP3 (SEPALLATA3) |
7.4 |
0.018 |
4.6 |
< 0.001 |
| Solyc07g006880 |
A_96_P040576 |
AK326074 |
AT5G57520 |
ZFP2 (ZINC FINGER PROTEIN 2) |
7.0 |
0.006 |
3.0 |
<0.001 |
| Solyc01g093960a |
A_96_P204169 |
BI203609 |
AT2G45650 |
AGL6 (AGAMOUS-LIKE 6) |
6.5 |
0.005 |
0.4 |
0.041 |
| Solyc06g073920a |
A_96_P249912 |
AK328263 |
AT1G08465 |
YAB2 (YABBY2) |
5.6 |
< 0.001 |
1.2 |
0.013 |
| Solyc02g085630 |
A_96_P039876 |
AI898032 |
AT4G36740 |
ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) |
5.5 |
0.023 |
0.6 |
0.059 |
| Solyc02g086690 |
A_96_P163816 |
AW737355 |
AT5G40350 |
MYB24 (myb domain protein 24) |
5.1 |
< 0.001 |
1.5 |
0.009 |
| Solyc12g038510a |
A_96_P114197 |
SlMBP21 TA53678_4081 |
AT5G15800 |
SEP1 (SEPALLATA1) |
5.0 |
0.001 |
0.2 |
0.051 |
| Solyc12g100150 |
A_96_P191189 |
AK328730 |
AT1G31320 |
LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) |
4.8 |
0.001 |
1.1 |
0.028 |
| Solyc01g106250 |
A_96_P113847 |
TA53587_4081 |
AT5G60142 |
DNA binding |
4.6 |
0.010 |
1.2 |
0.024 |
| Solyc02g085910 |
A_96_P050501 |
AK328874 |
AT3G02550 |
LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) |
4.3 |
0.006 |
0.8 |
0.127 |
| Solyc04g079360 |
A_96_P185909 |
BG126724 |
AT3G50060 |
MYB77 (myb domain protein 77) |
4.2 |
0.008 |
1.8 |
0.005 |
| Solyc04g081000a |
A_96_P206659 |
TAP3 DQ674532 |
AT3G54340 |
AP3 (APETALA 3) |
4.1 |
0.004 |
1.2 |
0.017 |
| Solyc07g008020 |
A_96_P212749 |
AK319758 |
AT4G32280 |
IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) |
4.0 |
0.005 |
1.8 |
0.076 |
| Solyc03g044300 |
A_96_P172149 |
SlAP2a AK326004 |
AT4G36920 |
AP2 (APETALA 2) |
3.8 |
0.007 |
2.0 |
0.022 |
| Solyc07g066330 |
A_96_P252807 |
TC202847 |
AT1G56010 |
ANAC022 | NAC1 |
3.4 |
0.012 |
0.1 |
0.494 |
| Solyc07g063410 |
A_96_P046081 |
AK323372 |
AT4G27410 |
ANAC072 | RD26 (RESPONSIVE TO DESICCATION 26) |
3.3 |
0.018 |
0.9 |
0.101 |
|
Phytohormone-related function |
|
|
|
|
|
|
|
|
| Solyc02g064690a |
A_96_P209009 |
BP875651 |
AT4G37580 |
HLS1 (HOOKLESS 1) |
4.8 |
0.003 |
2.4 |
0.001 |
| Solyc02g092490 |
A_96_P079464 |
AK247718 |
AT4G37580 |
HLS1 (HOOKLESS 1) |
3.6 |
0.019 |
1.2 |
0.101 |
| Solyc01g107400 |
A_96_P042196 |
BW692346 |
AT2G14960 |
GH3.1 |
4.0 |
0.035 |
1.7 |
0.008 |
| Solyc07g026650 |
A_96_P020931 |
SlACO5 AJ715790 |
AT2G19590 |
ACO1 (ACC OXIDASE 1) |
4.4 |
0.020 |
0.2 |
0.553 |
| Solyc10g017990 |
A_96_P028296 |
BG130984 |
AT5G56970 |
CKX3 (CYTOKININ OXIDASE 3) |
4.3 |
0.026 |
−1.5 |
0.291 |
| Solyc12g008900 | A_96_P107909 | TA49618_4081 | AT5G56970 | CKX3 (CYTOKININ OXIDASE 3) | 4.3 | 0.017 | −1.5 | 0.296 |
If more than two probes derived from the same gene were selected, only the result of the probe indicating the highest fold change value was shown in this table. Each assay result is shown in Additional file 6. Genes examined by RT-PCR are marked with lower case “a”.