Table 3.
Microsatellite markers size ranges and primer design and concentrations in multiplex PCR reactions
| PCR reaction | Marker | Range of PCR product size (bases) | Dye | Primer sequence (5′→3′) | Primer (μM) |
|---|---|---|---|---|---|
| 1 |
BAT25 |
130 |
Fam |
FamTCGCCTCCAAGAATGTAAGTgtgtcttTCTGCATTTTAACTATGGCTC |
0.25 |
| 1 |
BAT26 |
120 |
Hex |
HexTGACTACTTTTGACTTCAGCCgtgtcttAACCATTCAACATTTTTAACCC |
2.00 |
| 1 |
D3S3623 |
207–223 |
Fam |
FamCCATGTTGGTTAAAGGCAAGgtgtcttCTCTGAACTGAAGTGACCTCC |
0.25 |
| 1 |
D6S262 |
167–183 |
Hex |
HexATTCTTACTGCTGGAAAACCATgtgtcttGGAGCATAGTTACCCTTAAAATC |
0.50 |
| 1 |
D7S481 |
181–199 |
Ned |
NedTTCTCATTCTCACCCCCATgtgtcttATCCCCCACTGTCTCCAA |
0.50 |
| 2 |
D2S123 |
203–233 |
Hex |
gtgtcttAACAGGATGCCTGCCTTTAHexGGACTTTCCACCTATGGGAC |
1.00 |
| 2 |
D3S1262 |
132–146 |
Hex |
HexCAGTTGTGAGCCACCATGTCgtgtcttCAGTTTTTATGGACGGGGT |
2.00 |
| 2 |
D9S171 |
102–122 |
Ned |
NedGTGAACCTCATCTCTGTCTGCTgtgtcttACTTTATTAACAATCAGTATTTTCC |
0.25 |
| 2 |
D17S250 |
188–203 |
Ned |
gtgtcttGTAAGCATAAAAAGGAAGAATCANedTTACAGGCATGAGCCACTC |
0.50 |
| 2 | D18S61 | 150–176 | Fam | FamATTTCTAAGAGGACTCCCAAACgtgtcttGAAACTCAGGAGCATGGTTATG | 0.50 |
Summary of microsatellite markers, population size ranges for amplified products with specific primer sets, and primer sequences, labels, and concentrations used in multiplex PCR amplifications.