Table 1. List of simulations of integrin αIIbβ3, discussed in the present study.
Simulation | Free Thiol | Total Simulation time (ns) | Simulation Type | |
1 | WT | None | 70a | Wild type protein |
2 | C560R | Cys583-SH | 35 | In silico mutation |
3 | C583S | Cys560-SH | 341a | In silico mutation |
4 | Cys560–Cys567 | Cys581-SH | 35 | In silico thiol/disulfide exchangeproduct of C583S mutation |
5 | Cys560–Cys581 | Cys567-SH | 35 | In silico thiol/disulfide exchangeproduct of C583S mutation |
6 | C581S | Cys567-SH | 90a | In silico mutation |
7 | Cys567–Cys586 | Cys575-SH | 40 | In silico thiol/disulfide exchangeproduct of C581S mutation |
2 simulations of WT protein, 7 of C583S (with different restrain conditions; for more details see Table S1) and 3 of C581S were conducted.