Table 3. TCA cycle and related components identified for genomic bins r9c1-5 and r9c7.
# | Enzyme | EC | 1 | 2 | 3 | 4 | 5 | 7 |
---|---|---|---|---|---|---|---|---|
1 | Citrate synthase | 2.3.3.1 | — | — | G | — | P | P |
1 | ATP citrate lyase | 2.3.3.8 | P | P | P | — | — | — |
1 | Citrate lyase | 4.1.3.6 | P | G | G | G | G | — |
2 | Aconitate hydratase | 4.2.1.3 | P | G | P | — | G | G |
3 | Isocitrate dehydrogenase | 1.1.1.41/42 | P | P | P | P | G | — |
4a | 2-oxoglutarate dehydrogenase E1 | 1.2.4.2 | — | — | — | G | — | — |
4b | 2-oxoglutarate dehydrogenase E2 | 2.3.1.61 | — | — | — | G | G | — |
4c | Dihydrolipoamide dehydrogenase | 1.8.1.4 | P | — | — | G | G | — |
4 | 2-oxoglutarate synthase | 1.2.7.3 | P | P | P | G | G | — |
5 | Succinyl-CoA synthetase | 6.2.1.4/5 | P | P | P | G | G | — |
6 | Succinate/fumarate reductase | 1.3.5.1a | P | P | — | P | P | P |
7 | Fumarate hydratase | 4.2.1.2 | P | G | G | — | G | — |
8 | Malate dehydrogenase (NAD-dependent) | 1.1.1.37 | — | P | G | P | G | P |
8 | Malate dehydrogenase (quinone) | 1.1.5.4 | — | — | G | G | — | — |
Related: pyruvate/PEP | ||||||||
PEP synthetase | 2.7.9.2 | P | G | G | G | G | — | |
PEP carboxylase (GTP) | 4.1.1.32 | P | — | — | — | — | — | |
PEP carboxylase (ATP) | 4.1.1.49 | — | — | — | — | — | — | |
PEP carboxylase | 4.1.1.31 | G | — | — | — | P | — | |
Pyruvate/oxaloacetate carboxylase | 6.4.1.1b | P | P | P | G | G | — | |
Pyruvate ferredoxin oxidoreductase | 1.2.7.1 | P | G | P | P | — | — | |
a | Pyruvate dehydrogenase E1 | 1.2.4.1 | P | G | — | G | G | — |
b | Pyruvate dehydrogenase E2 | 2.3.1.12 | P | — | — | — | — | — |
c | (4c above) | |||||||
Related: acetate↔acetyl-CoA | ||||||||
Acetyl-CoA hydrolase/transferase | 3.1.2.1 | P | — | — | — | G | — | |
Acetyl-CoA synthetase | 6.2.1.1 | P | G | G | — | — | — | |
a | Acetate kinase (acetyl-P↔acetate) | 2.7.2.1 | P | G | G | G | G | — |
a | Acylphophatase (acetyl-P→acetate) | 3.6.1.7 | G | — | G | G | — | |
b | Phosphate acetyltransferase | 2.3.1.8 | P | G | G | G | G | — |
Abbeviations: #, order of TCA cycle reactions in the oxidative direction; EC, enzyme commission number; G, genes only identified; P, proteins also detected.
Reactions for enzymes not previously defined here: pyruvate carboxylase (pyruvate→oxaloacetate); pyruvate ferredoxin oxidoreductase (i.e., pyruvate synthase; pyruvate↔acetyl-CoA); pyruvate dehydrogenase and dihydrolipoamide dehydrogenase (pyruvate↔acetyl-CoA).
Succinate/fumarate reductase equates to EC:1.3.5.1/EC:1.3.99.1.
pyruvate carboxylase equates to EC:6.4.1.1/EC:4.1.1.3.