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. 2012 Nov 29;7(4):800–816. doi: 10.1038/ismej.2012.148

Table 3. TCA cycle and related components identified for genomic bins r9c1-5 and r9c7.

# Enzyme EC 1 2 3 4 5 7
1 Citrate synthase 2.3.3.1 G P P
1 ATP citrate lyase 2.3.3.8 P P P
1 Citrate lyase 4.1.3.6 P G G G G
2 Aconitate hydratase 4.2.1.3 P G P G G
3 Isocitrate dehydrogenase 1.1.1.41/42 P P P P G
4a 2-oxoglutarate dehydrogenase E1 1.2.4.2 G
4b 2-oxoglutarate dehydrogenase E2 2.3.1.61 G G
4c Dihydrolipoamide dehydrogenase 1.8.1.4 P G G
4 2-oxoglutarate synthase 1.2.7.3 P P P G G
5 Succinyl-CoA synthetase 6.2.1.4/5 P P P G G
6 Succinate/fumarate reductase 1.3.5.1a P P P P P
7 Fumarate hydratase 4.2.1.2 P G G G
8 Malate dehydrogenase (NAD-dependent) 1.1.1.37 P G P G P
8 Malate dehydrogenase (quinone) 1.1.5.4 G G
                 
  Related: pyruvate/PEP              
   PEP synthetase 2.7.9.2 P G G G G
   PEP carboxylase (GTP) 4.1.1.32 P
   PEP carboxylase (ATP) 4.1.1.49
   PEP carboxylase 4.1.1.31 G P
   Pyruvate/oxaloacetate carboxylase 6.4.1.1b P P P G G
   Pyruvate ferredoxin oxidoreductase 1.2.7.1 P G P P
a  Pyruvate dehydrogenase E1 1.2.4.1 P G G G
b  Pyruvate dehydrogenase E2 2.3.1.12 P
c  (4c above)              
                 
  Related: acetate↔acetyl-CoA              
   Acetyl-CoA hydrolase/transferase 3.1.2.1 P G
   Acetyl-CoA synthetase 6.2.1.1 P G G
a  Acetate kinase (acetyl-P↔acetate) 2.7.2.1 P G G G G
a  Acylphophatase (acetyl-P→acetate) 3.6.1.7   G G G
b  Phosphate acetyltransferase 2.3.1.8 P G G G G

Abbeviations: #, order of TCA cycle reactions in the oxidative direction; EC, enzyme commission number; G, genes only identified; P, proteins also detected.

Reactions for enzymes not previously defined here: pyruvate carboxylase (pyruvate→oxaloacetate); pyruvate ferredoxin oxidoreductase (i.e., pyruvate synthase; pyruvate↔acetyl-CoA); pyruvate dehydrogenase and dihydrolipoamide dehydrogenase (pyruvate↔acetyl-CoA).

a

Succinate/fumarate reductase equates to EC:1.3.5.1/EC:1.3.99.1.

b

pyruvate carboxylase equates to EC:6.4.1.1/EC:4.1.1.3.