Table 3. Primer sequences and their positions in the genome of parvovirus.
Primer | Nucleotide sequence (5′–3′) | Positiona | Sense | Specificity | Ref. | Purpose of use |
CPV-For | AAACAGGAATTAACTATACTAATATATTTA | 4101–4130 | + | FPLV&CPVm | [46] | Viral survey |
CPV-Rev | AAATTTGACCATTTGGATAAACT | 4138–4167 | − | FPLV &CPV | ||
CPV-Probe | FAM-TGGTCCTTTAACTGCATTAAATAATGTACC-TAMRA | 4171–4193 | + | FPLV &CPV | ||
CPV-1F | ACCAGATCATCCATCAACATC | 2653–2673 | + | FPLV &CPV | [51] | vp2 gene amplification |
CPV-1R | CAATTAGTTGCCAATCTCCTG | 3153–3173 | − | FPLV &CPV | ||
CPV-2F | AAATTGTAACACCTTGGTCATTG | 3096–3118 | + | FPLV &CPV | ||
CPV-2R | AAATGGTGGTAAGCCCAATG | 3636–3655 | − | FPLV &CPV | ||
CPV-3F | ACAGGTGATGAATTTGCTACAG | 3554–3575 | + | FPLV &CPV | ||
CPV-3R | TTACAGGAAGGTTAAAGTTAAT | 4037–4058 | − | FPLV &CPV | ||
CPV-4F | CAACAGGAGAAACACCTGAG | 3954–3974 | + | FPLV&CPVm | ||
CPV-4R | TCTTCTATTTCTTACAGTTATTG | 4718–4740 | − | FPLV &CPV | ||
555-For | CAGGAAGATATCCAGAAGGA | 4002–4021 | + | FPLV &CPV | [52] | vp2 gene amplification |
555-Rev | GGTGCTAGTTGATATGTAATAAACA | 4561–4585 | − | FPLV &CPV | ||
P1 | ATGAGTGATGGAGCAGTTC | 2786–2804 | + | FPLV &CPV | [12],[50] | vp2 gene amplification |
PR | TTTCTAGGTGCTAGTTGAG | 4512–4530 | − | FPLV &CPV |
position in the complete genome of strain CPV-N (NC001539). mmismatch in some isolates.