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. 2013 Mar 20;8(3):e59399. doi: 10.1371/journal.pone.0059399

Table 3. Primer sequences and their positions in the genome of parvovirus.

Primer Nucleotide sequence (5′–3′) Positiona Sense Specificity Ref. Purpose of use
CPV-For AAACAGGAATTAACTATACTAATATATTTA 4101–4130 + FPLV&CPVm [46] Viral survey
CPV-Rev AAATTTGACCATTTGGATAAACT 4138–4167 FPLV &CPV
CPV-Probe FAM-TGGTCCTTTAACTGCATTAAATAATGTACC-TAMRA 4171–4193 + FPLV &CPV
CPV-1F ACCAGATCATCCATCAACATC 2653–2673 + FPLV &CPV [51] vp2 gene amplification
CPV-1R CAATTAGTTGCCAATCTCCTG 3153–3173 FPLV &CPV
CPV-2F AAATTGTAACACCTTGGTCATTG 3096–3118 + FPLV &CPV
CPV-2R AAATGGTGGTAAGCCCAATG 3636–3655 FPLV &CPV
CPV-3F ACAGGTGATGAATTTGCTACAG 3554–3575 + FPLV &CPV
CPV-3R TTACAGGAAGGTTAAAGTTAAT 4037–4058 FPLV &CPV
CPV-4F CAACAGGAGAAACACCTGAG 3954–3974 + FPLV&CPVm
CPV-4R TCTTCTATTTCTTACAGTTATTG 4718–4740 FPLV &CPV
555-For CAGGAAGATATCCAGAAGGA 4002–4021 + FPLV &CPV [52] vp2 gene amplification
555-Rev GGTGCTAGTTGATATGTAATAAACA 4561–4585 FPLV &CPV
P1 ATGAGTGATGGAGCAGTTC 2786–2804 + FPLV &CPV [12],[50] vp2 gene amplification
PR TTTCTAGGTGCTAGTTGAG 4512–4530 FPLV &CPV
a

position in the complete genome of strain CPV-N (NC001539). mmismatch in some isolates.