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. 2013 Mar 20;8(3):e58269. doi: 10.1371/journal.pone.0058269

Table 3. Core and abundant OTUs found in the Porphyra umbilicalis microbiome identified using V8 (Taxonomic level 2 = phylum, 3 = class, 4 = order, 5 = family, 6 = genus).

A. Core Microbiomea
Tax level Taxon No. of OTUs OTU code number
2 Bacteroidetes 7
3 Sphingobacteria 4
5 Saprospiraceae 4 1982(F)*, 2434(E)*, 2521(W)**, 2525(E)*
3 Flavobacteria 2
5 Flavobacteriaceae 2 2410(F)*, 2427(W)*
3 Unclassified 1 2387(W)
2 Chloroflexi 1 2493(E)*
2 Proteobacteria 5
3 Gammaproteobacteria 1
6 Granulosicoccus 1 2408(W)*
3 Alphaproteobacteria 4
5 Hyphomonadaceae 1 2494(W)* L
5 Rhodobacteraceae 1 2225(E)* L
5 Unclassified 2 1933(E), 2219(W)*
B. Lab: Most abundant OTUsb
Tax level Taxon No. of OTUs OTU code number
2 Bacteroidetes 3
3 Sphingobacteria 1
5 Saprospiraceae 1 2521
3 Flavobacteria 2
5 Flavobacteriaceae 2 2367, 2427
2 Planctomycetes 1 1352
2 Proteobacteria 4
3 Gammaproteobacteria 1
5 Alteromonadaceae 1 2182
3 Alphaproteobacteria 1
5 Rhodobacteraceae 1 2225
5 Sphingomonadaceae 1
6 Sphingopyxis 1 1938
C. Field: Most abundant OTUsc
Tax level Taxon No. of OTUs OTU code number
2 Bacteroidetes 9
3 Sphingobacteria 9
4 Sphingobacteriales 3 1875, 2381, 2383
5 Saprospiraceae 4 2434, 2497, 2521, 2525
6 Lewinella 2 2302, 2475
3 Flavobacteria 1
5 Flavobacteriaceae 1 2410
3 Unclassified 1 2435
2 Proteobacteria 1
3 Alphaproteobacteria 1 2514
2 Unclassified (Bacteria) 3 2489, 2500, 2524
a

13 OTUs (0.03 distance) found across fall, winter & lab groups.

*

present at≥1% of all sequences on at least one blade (n = 12)

*

L≥1% on a lab blade

**

present at ≥1% on all 12 blades

b

OTUs (0.03 distance) with sequence abundance greater than 1% on both lab blades

c

OTUs (0.03 distance) with sequence abundance greater than 1% on at least 3 of the 10 winter (n = 5) and fall (n = 5) blades; underlined OTUs present on at least 5 of 10 blades; OTU 2521 present on all.

Designations of F = Fall, E = Evenly distributed between fall and winter, W = Winter refer to a ≥3× skew in sequence abundance toward that group.