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. 2013 Mar 20;8(3):e58269. doi: 10.1371/journal.pone.0058269

Table 4. Core and abundant OTUs found in the Porphyra umbilicalis microbiome identified using V5V6 (Taxonomic level 2 = phylum, 3 = class, 4 = order, 5 = family, 6 = genus).

A. Core Microbiomea
Tax level Taxon No. of OTUs OTU code number
2 Bacteroidetes 9
3 Sphingobacteria 2
4 Sphingobacteriales 2 4509(W)*, 4580(W)*
3 Flavobacteria 6
5 Flavobacteriaceae 6 3834(E), 3913(E), 3944(F), 3969(E), 4507(F)*, 4510(W)* L
2 Chloroflexi 1 4599(W)*
2 Planctomycetes 2
3 Phycisphaerae 1
5 Phycisphaeraceae 1
6 Phycisphaera 1 3875(W)
3 Planctomycetacia 1
5 Planctomycetaceae 1 3994(F)*
2 Proteobacteria 1
3 Alphaproteobacteria 1
5 Rhodobacteraceae 1 4349(W)* L
2 Unclassified(Bacteria) 6 2742(E), 4252(F)*, 4368(E), 4392(F)*, 4453(W),4491(E)*
B. Lab: Most abundant OTUsb
Tax level Taxon No. of OTUs OTU code number
2 Bacteroidetes 1
3 Flavobacteria 1
5 Flavobacteriaceae 1 4510
2 Proteobacteria 1
3 Alphaproteobacteria 1
5 Rhodobacteraceae 1 4349
2 Unclassified (Bacteria) 1 2443
C. Field: Most abundant OTUsc
Tax level Taxon No. of OTUs OTU code number
2 Bacteroidetes 3
3 Sphingobacteria 2
4 Sphingobacteriales 2 4509, 4580
3 Flavobacteria 1
5 Flavobacteriaceae 1 4507
2 Chloroflexi 1 4599
2 Unclassified (Bacteria) 2 4392, 4491
a

19 OTUs (0.03 distance) shared between Fall, Winter & Lab Groups

*

present at ≥1% of all sequences on at least one blade (n = 12)

*

L ≥1% on a lab blade

b

OTUs (0.03 distance) with sequence abundance greater than 1% on both lab blades

c

OTUs (0.03 distance) with sequence abundance greater than 1% on at least 3 of the 10 winter (n = 5) and fall (n = 5) blades

Designations of F = Fall, E = Evenly distributed between fall and winter, W = Winter refer to a ≥3× skew in sequence abundance toward that group.