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. Author manuscript; available in PMC: 2014 Mar 1.
Published in final edited form as: Chromosome Res. 2013 Jan 29;21(1):15–26. doi: 10.1007/s10577-012-9334-8

Figure 5. Identification and chromosome-wide distribution of MMUY repeat unit-1 and unit-2.

Figure 5

A. The dot-matrix plot RE profiles of MMUY repeat unit-1 (513,204 b) and unit-2 (860,960 b) were generated by self-alignment of each sequence using REMiner-II. B. The distribution patterns of the MMUY repeat unit-1 and unit-2 were examined by alignment of the repeat units (1 and 2) against the entire MMUY sequence. For a high-resolution pattern evaluation and presentation, the dot-matrix plots were expanded at five 2 Mb size regions. Seven RE array clusters of MMUY (a ~ g) are indicated on a scaled line map beneath the dot-matrix plot. The plot patterns confirmed that MMUY repeat unit-1 and unit-2 predominantly represent the chromosome except for the region near the 5′-end. X axis: MMUY (Build 38.1) and Y axis: MMUY repeat unit-1 and unit-2.