Table 1. RE populations in two MMUY repeat units.

The REs residing in MMUY repeat unit-1 and MMUY unit-2 were identified using RepeatMasker and its database.

MMUY repeat unit-1				MMUY repeat unit-2
Total length:	513,204 b			Total length:	860,960 b
GC level:		38.97%		GC level:		39.04%
Bases masked:	274,491 b	53.49%		Bases masked:	530,101 b	61.57%
REs	No. of elements	Length occupied (b)	% of sequence	REs	No. of elements	Length occupied (b)	% of sequence
SINEs	104	14,876	2.9	SINEs	158	22,458	2.61
ALU/B1	50	6,405	1.25	ALU/B1	87	11,049	1.28
B2-B4	52	8,355	1.63	B2-B4	69	11,275	1.31
IDs	2	116	0.02	IDs	2	134	0.02
LINEs	141	105,957	20.65	LINEs	246	264,930	30.77
LINE1	138	105,599	20.58	LINE1	244	264,479	30.72
LINE2	1	226	0.04	LINE2	2	451	0.05
L3/CR1	2	132	0.03	L3/CR1	0	0	0
LTR elements	180	118,591	23.11	LTR elements	215	183,871	21.36
ERVL	7	2,269	0.44	ERVL	14	4,111	0.48
ERVL-MaLRs	93	28,048	5.47	ERVL-MaLRs	63	22,686	2.63
ERV-class I	17	30,671	5.98	ERV-class I	45	82,098	9.54
ERV-class II	63	57,603	11.22	ERV-class II	93	74,976	8.71
DNA elements	14	1,924	0.37	DNA elements	13	1,850	0.21
hAT-Charlie	3	355	0.07	hAT-Charlie	9	1,267	0.15
TcMar-Tigger	11	1,569	0.31	TcMar-Tigger	4	583	0.07
Unclassified	25	12,476	2.43	Unclassified	17	18,604	2.16
Small RNAs	0	0	0	Small RNAs	5	629	0.07
Satellites	35	4,100	0.8	Satellites	80	9,915	1.15
Simple repeats	176	10,887	2.12	Simple repeats	313	19,812	2.3
Low complexity	86	5,680	1.11	Low complexity	132	8,032	0.93