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. 2013 Mar 5;4(2):e00625-12. doi: 10.1128/mBio.00625-12

TABLE 2 .

Nucleotide diversity of fim and sfm in publicly available fully assembled genome sequences of S. enterica and E. coli

Gene
category
S. enterica subsp. I
(24)a
E. colia
Entire species
(44)
B2 group
(15)
π (%) dS dN π (%) dS dN π (%) dS dN
3-locus
housekeeping
genesb
1.3 ± 0.05 0.049 0.001 1.8 ± 0.05 0.077 0.001 0.5 ± 0.04 0.02 0.001
6-locus
housekeeping
genesc
1.2 ± 0.04 0.047 0.001 2.7 ± 0.05 0.117 0.002 1.3 ± 0.07 0.053 0.002
fimA 1.2 ± 0.07 0.031 0.006 7.8 ± 0.21 0.217 0.041 8.6 ± 0.62 0.246 0.045
fimC 1.2 ± 0.05 0.032 0.006 1.3 ± 0.03 0.042 0.004 1.1 ± 0.01 0.034 0.004
sfmAd Not applicable 0.7 ± 0.06 0.025 0.002 Not available
sfmCe Not applicable 1.5 ± 0.06 0.047 0.005 Not available
a

Numbers in parentheses represent numbers of analyzed sequences.

b

Data represent the results determined for concatenated sequences of internal (450- to 500-bp) fragments of the housekeeping genes (thrA, aroC, and hisD for S. enterica and adk, fumC, and gyrB for E. coli).

c

Data represent the results determined for concatenated sequences of internal (450- to 500-bp) fragments of the housekeeping genes (thrA, aroC, hisD, adk, fumC, and gyrB for both S. enterica and E. coli).

d

Data represent the results for 29 sfmA sequences determined in 44 E. coli strains.

e

Data represent the results for 28 sfmC sequences determined in 44 E. coli strains.