TABLE 2 .
Nucleotide diversity of fim and sfm in publicly available fully assembled genome sequences of S. enterica and E. coli
Gene category |
S. enterica subsp. I (24)a |
E. colia |
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Entire species (44) |
B2 group (15) |
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π (%) | dS | dN | π (%) | dS | dN | π (%) | dS | dN | |
3-locus housekeeping genesb |
1.3 ± 0.05 | 0.049 | 0.001 | 1.8 ± 0.05 | 0.077 | 0.001 | 0.5 ± 0.04 | 0.02 | 0.001 |
6-locus housekeeping genesc |
1.2 ± 0.04 | 0.047 | 0.001 | 2.7 ± 0.05 | 0.117 | 0.002 | 1.3 ± 0.07 | 0.053 | 0.002 |
fimA | 1.2 ± 0.07 | 0.031 | 0.006 | 7.8 ± 0.21 | 0.217 | 0.041 | 8.6 ± 0.62 | 0.246 | 0.045 |
fimC | 1.2 ± 0.05 | 0.032 | 0.006 | 1.3 ± 0.03 | 0.042 | 0.004 | 1.1 ± 0.01 | 0.034 | 0.004 |
sfmAd | Not applicable | 0.7 ± 0.06 | 0.025 | 0.002 | Not available | ||||
sfmCe | Not applicable | 1.5 ± 0.06 | 0.047 | 0.005 | Not available |
Numbers in parentheses represent numbers of analyzed sequences.
Data represent the results determined for concatenated sequences of internal (450- to 500-bp) fragments of the housekeeping genes (thrA, aroC, and hisD for S. enterica and adk, fumC, and gyrB for E. coli).
Data represent the results determined for concatenated sequences of internal (450- to 500-bp) fragments of the housekeeping genes (thrA, aroC, hisD, adk, fumC, and gyrB for both S. enterica and E. coli).
Data represent the results for 29 sfmA sequences determined in 44 E. coli strains.
Data represent the results for 28 sfmC sequences determined in 44 E. coli strains.