Table 3.
BLAST based annotation of N. furzeri transcript contigs
| Database | Contigs hit | Database entries hit | Avg. identity | Database entries used | Annotated contigs |
|---|---|---|---|---|---|
| Ensembl fish proteins |
98,941 |
38,355 |
73% |
37,739 (81%) |
92,857 (85%) |
| UniProt |
98,053 |
42,361 |
71% |
2,643 (6%) |
3,425 (4%) |
| NCBI nr proteins |
96,548 |
41,500 |
71% |
956 (2%) |
1,450 (1%) |
| Refseq human proteins |
80,671 |
18,071 |
61% |
305 (1%) |
497 (1%) |
| NCBI UniGene transcripts |
107,901 |
36,593 |
77% |
3,206 (7%) |
7,113 (6%) |
| Ensembl fish transcripts |
98,099 |
39,301 |
77% |
1,369 (3%) |
3,690 (3%) |
| Total | 122,177 | 46,218 (100%) | 109,032 (100%) |