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. 2013 Mar 4;13:52. doi: 10.1186/1471-2180-13-52

Table 1.

Details of Vibrio cholerae strains analysed in this study

Strain Place† Source Year Pulse type ctxAB toxR hlyA tcpA* zot NAG-ST T3SS
 T3SS
 adk gyrB mdh metE pntA purM pyrC Sequence type
( vcsC2 ) ( vcsV2 )
N11192
 HZ
 sporadic
 2011
 24
 -
 +
 +
 -
 -
 -
 -
 -
 39
 45
 14
 67
 50
 1
 42
 93
N10001
 HZ
 surveillance
 2010
 13
 -
 +
 +
 -
 -
 -
 +
 +
 2
 44
 11
 64
 6
 8
 10
 94
N10002
 HZ
 surveillance
 2010
 N/A‡
 -
 +
 +
 -
 -
 -
 +
 +
 2
 23
 45
 48
 47
 35
 5
 89
N10003
 HZ
 surveillance
 2010
 14
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N10004
 HZ
 surveillance
 2010
 15
 -
 +
 +
 -
 -
 -
 +
 +
 2
 38
 14
 56
 6
 36
 51
 83
N10005
 HZ
 surveillance
 2010
 16
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N10006
 HZ
 surveillance
 2010
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N10007
 HZ
 surveillance
 2010
 18
 -
 +
 +
 -
 -
 -
 -
 +
 19
 46
 14
 22
 48
 1
 52
 86
N10008
 HZ
 surveillance
 2010
 19
 -
 +
 +
 -
 -
 -
 -
 -
 38
 47
 44
 65
 49
 1
 53
 91
N10009
 HZ
 surveillance
 2010
 20
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11191
 JH
 sporadic
 2011
 23
 -
 +
 +
 -
 -
 -
 -
 -
 24
 36
 1
 50
 30
 18
 45
 81
N743
 LS
 outbreak B
 2006
 8
 -
 -
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N744
 LS
 outbreak B
 2006
 9
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N745
 LS
 outbreak B
 2006
 10
 -
 +
 +
 -
 -
 -
 +
 -
 2
 5
 45
 56
 6
 36
 51
 80
N746
 LS
 outbreak B
 2006
 11
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N747
 LS
 outbreak B
 2006
 9
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N748
 LS
 outbreak B
 2006
 9
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N749
 LS
 outbreak B
 2006
 9
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N750
 LS
 sporadic
 2007
 12
 -
 +
 +
 -
 -
 -
 +
 +
 11
 27
 11
 63
 19
 1
 4
 88
N733
 NB
 outbreak A
 2005
 2
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 29
 19
 6
 36
 51
 82
N734
 NB
 outbreak A
 2005
 2
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 29
 19
 6
 36
 51
 82
N735
 NB
 outbreak A
 2005
 3
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 29
 19
 6
 36
 51
 82
N737
 NB
 outbreak A
 2005
 2
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 29
 19
 6
 36
 51
 82
N738
 NB
 outbreak A
 2005
 2
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 29
 19
 6
 36
 51
 82
N739
 NB
 outbreak A
 2005
 4
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 29
 19
 6
 36
 51
 82
N11193
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11194
 QZ
 outbreak C
 2011
 25
 -
 +
 +
 -
 -
 -
 -
 -
 27
 5
 14
 22
 30
 18
 45
 92
N11196
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11198
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11199
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11200
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11201
 QZ
 outbreak C
 2011
 25
 -
 +
 +
 -
 -
 -
 -
 -
 27
 5
 14
 22
 30
 18
 45
 92
N11202
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N11203
 QZ
 outbreak C
 2011
 17
 -
 +
 +
 -
 -
 -
 +
 +
 2
 5
 45
 56
 6
 36
 51
 80
N740
 QZ
 sporadic
 2006
 6
 -
 +
 +
 -
 -
 -
 -
 +
 26
 5
 46
 50
 31
 14
 45
 90
N11041
 SX
 sporadic
 2011
 21
 -
 +
 +
 -
 -
 -
 +
 +
 19
 1
 14
 66
 48
 1
 52
 87
N11072
 SX
 sporadic
 2011
 22
 -
 +
 +
 -
 -
 -
 +
 +
 3
 41
 4
 48
 47
 35
 5
 84
N742
 TZ
 sporadic
 2006
 7
 -
 +
 +
 -
 -
 -
 +
 +
 11
 27
 11
 63
 19
 1
 4
 88
N732
 WZ
 sporadic
 2005
 1
 -
 +
 +
 -
 -
 -
 +
 +
 3
 23
 15
 48
 47
 35
 5
 85
N736 WZ sporadic 2005 5 - + + - - - + + 3 23 15 48 47 35 5 85

† Place corresponds to different cities in Zhejiang province: HZ - Hangzhou; JH - Jinhua; LS - Lishui; NB - Ningbo; QZ - Quzhou; SX - Shaoxing; TZ - Taizhou; and WZ – Wenzhou.

‡ The isolate was unable to be typed by PFGE.

*Two primer pairs of tcpA (see Table 2) were used. Both were negative.