Table 1.

GRCh37/hg19 Regions Chosen for 3.5-Mb Targeted Capture

Gene name	Ensembl release 55 gene ID	Chromosome	Size of region (bp)	Strand	GC content
APH1A	ENSG00000117362	1	3833	−	54%
BIRC6	ENSG00000115760	2	261,967	+	38%
HOXD11	ENSG00000128713	2	2498	+	62%
RARB	ENSG00000077092	3	423,700	+	40%
HAND2	ENSG00000164107	4	3826	−	56%
NPR3	ENSG00000113389	5	77,839	+	41%
KIF3A	ENSG00000131437	5	45,042	−	37%
TCOF1	ENSG00000070814	5	42,768	+	52%
TBX18	ENSG00000112837	6	30,159	−	37%
DLL1	ENSG00000198719	6	8499	−	58%
LFNG	ENSG00000106003	7	16,745	+	63%
HOXA1	ENSG00000105991	7	3109	−	47%
HOXA2	ENSG00000105996	7	2520	−	49%
SFRP1	ENSG00000104332	8	47,609	−	49%
GDF6	ENSG00000156466	8	18,560	−	52%
NOTCH1	ENSG00000148400	9	51,441	−	63%
DKK1	ENSG00000107984	10	3475	+	45%
SFRP5	ENSG00000120057	10	5458	−	58%
N/A	N/A—2 Mb Contiguous targeted region, chromosome 11	11	2,000,000		39%
ZBTB16	ENSG00000109906	11	191,180	+	47%
GDF3	ENSG00000184344	12	6107	−	46%
PSEN1	ENSG00000080815	14	87,355	+	43%
APH1B	ENSG00000138613	15	31,675	+	40%
MESP2	ENSG00000188095	15	2486	+	60%
AXIN1	ENSG00000103126	16	65,124	−	54%
TBX6	ENSG00000149922	16	6223	−	58%
HES7	ENSG00000179111	17	3203	−	64%
RARA	ENSG00000131759	17	48,549	+	57%
HOXB1	ENSG00000120094	17	1565	−	61%
HOXB2	ENSG00000173917	17	2472	−	56%
DLL3	ENSG00000090932	19	9661	+	57%
BMP2	ENSG00000125845	20	12,265	+	43%
		Total size of targets	3,516,913

For each region, the gene name, Ensembl ID, chromosome, size, and percent guanine-cytosine (GC) content is given. An additional 2-Mb portion of chromosome 11 was also added to the capture.