Table 4.
Mean Coverage and sd
| Statistic | 3.5-Mb Targeted region |
Bait regions in common |
||
|---|---|---|---|---|
| All reads | PCR duplicates removed | All reads | PCR duplicates removed | |
| Mean coverage | ||||
| Agilent | 397 | 331 | 745 | 619 |
| NimbleGen array | 439 | 286 | 536 | 348 |
| NimbleGen in-solution | 438 | 297 | 521 | 360 |
| sd | ||||
| Agilent | 365 | 375 | 442 | 354 |
| NimbleGen array | 172 | 174 | 253 | 147 |
| NimbleGen in-solution | 218 | 219 | 351 | 187 |
Statistics for the mean coverage and sd of coverage for each platform are provided for both sets that included PCR duplicates and those without against the entire 3.5-Mb targeted capture and only the bait regions in common.