Table 5. Fastqz alignment benchmarks.
Data type | Mode | Unaligned size | Aligned size |
Identifier | fast | 251,697,610 | 251,697,610 |
Alignment | fast | n/a | 183,313,663 |
Sequence | fast | 639,049,273 | 49,174,693 |
Quality | fast | 867,178,255 | 867,178,255 |
Total | fast | 1,757,925,138 | 1,351,364,221 |
Identifier | slow | 47,861,283 | 47,861,283 |
Alignment | slow | n/a | 105,063,319 |
Sequence | slow | 503,239,070 | 30,852,888 |
Quality | slow | 574,112,937 | 574,112,937 |
Total | slow | 1,125,213,290 | 757,890,427 |
Size of data components in the public SequenceSqueeze test set SRR062634 (6,345,444,769 bytes uncompressed).