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. 2013 Mar 25;8(3):e58987. doi: 10.1371/journal.pone.0058987

Figure 10. Co-expression network.

Figure 10

Co-expression networks generated by CORNET using AtGenExpress biotic stress compendia based on a Pearson’s correlation coefficient threshold ≥0.7. The networks were visualised using Cytoscape2.7.0. Pink-coloured edges represent a strong correlation of ≥0.9, and cyan-coloured edges represent a correlation of ≥0.7 to 0.9. A) Co-expression network analysis among the 66-supernode cluster in the common group resulted in a network of 26 nodes 25 edges. B) Co-expression network analysis of the aphid-specific TFs resulted in a network of 24 tightly co-expressed TF modules. C) Co-expression network analysis among 104 Pseudomonas-specific TFs resulted in a tightly co-expressed modular network consisting of 55 nodes and 94 edges.