Table 1.
Characteristics of primers and primer performance data used for qPCR
| Gene symbol |
Forward primer (from 5′ to 3′) |
Product size (bp) | NCBI GenBank | Slope | R2# | Efficiency* | M |
|---|---|---|---|---|---|---|---|
| Reverse primer (from 5′ to 3′) | |||||||
|
Reference genes |
|||||||
| RSP9 |
GTCGCAAGACTTATGTGACC |
325 |
XM_003356050 |
−0.28 |
0.999 |
1.91 |
0.053 |
| AGCTTAAAGACCTGGGTCT | |||||||
| ATP5G1 |
CAGTCACCTTGAGCCGGGCGA |
94 |
NM_001025218 |
−0.30 |
0.998 |
1.99 |
0.054 |
| TAGCGCCCCGGTGGTTTGC | |||||||
| GSR |
AGCGCGATGCCTACGTGAGC |
175 |
AY368271 |
−0.29 |
0.997 |
1.94 |
0.055 |
| GGTACGCCGCCTGTGGCAAT | |||||||
| ACTB |
GACATCCGCAAGGACCTCTA |
205 |
XM_003124280 |
−0.32 |
0.992 |
2.10 |
0.064 |
| ACATCTGCTGGAAGGTGGAC | |||||||
| SHAS2 |
GAAAAGGCTAACCTACCCTG |
218 |
NM_214053 |
−0.21 |
0.996 |
1.65 |
0.076 |
| TGTTGGACAAGACCAGTTGG | |||||||
|
Target genes |
|||||||
| ACOX1 |
CTCGCAGACCCAGATGAAAT |
218 |
AF185048 |
−0.28 |
0.995 |
1.90 |
|
| TCCAAGCCTCGAAGATGAGT | |||||||
| ALDH9A1 |
GCTGCTGGCCGAAATCTATA |
215 |
XM_001924860 |
−0.29 |
0.999 |
1.94 |
|
| CACACTTCCAGTGAAGGAGA | |||||||
| BBOX1 |
GTGCCGAAAGCTCAAGGAAAAA |
342 |
XM_003122909 |
−0.31 |
0.985 |
2.06 |
|
| CTCTGCCGGCCGTGAAGTAAC | |||||||
| CYP4A24 |
GGTTTGCTCCTGTTGAATGG |
121 |
NM_214424 |
−0.29 |
0.999 |
1.96 |
|
| GCATCACTTGGACAGACTTG | |||||||
| FABP4 |
CACCAGGAAGGTGGCTGGCA |
197 |
NM_001002817 |
−0.30 |
0.999 |
1.98 |
|
| CCTGTACCAGGGCGCCTCCA | |||||||
| FGF21 |
GAAGCCAGGGGTCATTCAAA |
149 |
NM_001163410 |
−0.31 |
0.999 |
2.03 |
|
| GGTAAACGTTGTAGCCATCC | |||||||
| HMGCS2 |
GGACCAAACAGACCTGGAGA |
198 |
NM_214380 |
−0.32 |
0.994 |
2.07 |
|
| ATGGTCTCAGTGCCCACTTC | |||||||
| SLC22A5 |
TGACCATATCAGTGGGCTA |
384 |
XM_003123912 |
−0.30 |
0.995 |
2.00 |
|
| AGTAGGGAGACAGGATGCT | |||||||
| SLC25A20 |
GCAAAGCCCATTAGCCCTCT |
312 |
XM_003483178 |
−0.28 |
0.998 |
1.89 |
|
| GAGCACATCCTCTGGGTGTT | |||||||
| TMLHE | GCACCATACAGCCTCCAAGT |
221 | XM_003135511 | −0.35 | 0.995 | 1.79 | |
| TGGTCTCATCCAGACGAACA |
#Coefficient of determination of the standard curve. *The efficiency is determined by [10-slope].