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. 2013 Mar 14;55(1):24. doi: 10.1186/1751-0147-55-24

Table 1.

Characteristics of primers and primer performance data used for qPCR

Gene symbol Forward primer (from 5to 3)
Product size (bp) NCBI GenBank Slope R2# Efficiency* M
Reverse primer (from 5to 3)
Reference genes
             
  RSP9
GTCGCAAGACTTATGTGACC
325
XM_003356050
−0.28
0.999
1.91
0.053
AGCTTAAAGACCTGGGTCT
  ATP5G1
CAGTCACCTTGAGCCGGGCGA
94
NM_001025218
−0.30
0.998
1.99
0.054
TAGCGCCCCGGTGGTTTGC
  GSR
AGCGCGATGCCTACGTGAGC
175
AY368271
−0.29
0.997
1.94
0.055
GGTACGCCGCCTGTGGCAAT
  ACTB
GACATCCGCAAGGACCTCTA
205
XM_003124280
−0.32
0.992
2.10
0.064
ACATCTGCTGGAAGGTGGAC
  SHAS2
GAAAAGGCTAACCTACCCTG
218
NM_214053
−0.21
0.996
1.65
0.076
TGTTGGACAAGACCAGTTGG
Target genes
             
  ACOX1
CTCGCAGACCCAGATGAAAT
218
AF185048
−0.28
0.995
1.90
 
TCCAAGCCTCGAAGATGAGT
  ALDH9A1
GCTGCTGGCCGAAATCTATA
215
XM_001924860
−0.29
0.999
1.94
 
CACACTTCCAGTGAAGGAGA
  BBOX1
GTGCCGAAAGCTCAAGGAAAAA
342
XM_003122909
−0.31
0.985
2.06
 
CTCTGCCGGCCGTGAAGTAAC
  CYP4A24
GGTTTGCTCCTGTTGAATGG
121
NM_214424
−0.29
0.999
1.96
 
GCATCACTTGGACAGACTTG
  FABP4
CACCAGGAAGGTGGCTGGCA
197
NM_001002817
−0.30
0.999
1.98
 
CCTGTACCAGGGCGCCTCCA
  FGF21
GAAGCCAGGGGTCATTCAAA
149
NM_001163410
−0.31
0.999
2.03
 
GGTAAACGTTGTAGCCATCC
  HMGCS2
GGACCAAACAGACCTGGAGA
198
NM_214380
−0.32
0.994
2.07
 
ATGGTCTCAGTGCCCACTTC
  SLC22A5
TGACCATATCAGTGGGCTA
384
XM_003123912
−0.30
0.995
2.00
 
AGTAGGGAGACAGGATGCT
  SLC25A20
GCAAAGCCCATTAGCCCTCT
312
XM_003483178
−0.28
0.998
1.89
 
GAGCACATCCTCTGGGTGTT
  TMLHE GCACCATACAGCCTCCAAGT
221 XM_003135511 −0.35 0.995 1.79  
TGGTCTCATCCAGACGAACA

#Coefficient of determination of the standard curve. *The efficiency is determined by [10-slope].