Table 1. Distribution of the RIN Binding Sites and the Number of Potential Direct RIN Target Genes.
The No. of RIN Binding Sites | (%) | The No. of Genes Containing a RIN Binding Site | (%) | |
---|---|---|---|---|
Total | 1046 | (100) | 1200 | (100) |
Region | ||||
2-kb upstream | 1046 | (100) | 1090 | (91) |
> Exon | 55 | (5) | 51 | (4) |
> Intron | 5 | (0.5) | 5 | (0.4) |
> 1-kb downstream | 88 | (8) | 87 | (7) |
RIN-binding sites | ||||
> With CArG box | 620 | (59) | 718 | (60) |
> C(C/T)(A/T)6(A/G)G | 380 | (36) | 437 | (36) |
> C(A/T)8G | 423 | (40) | 489 | (41) |
> C(C/T)(A/T)G(A/T)4(A/G)G | 130 | (12) | 174 | (15) |
> Without CArG box | 426 | (41) | 539 | (45) |