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. 2013 Feb 22;25(2):762–776. doi: 10.1105/tpc.113.109116

Table 1. Defense Genes That Are Differentially Expressed between elp2 and the Wild Type during Pst DC3000/avrRpt2 Infection.

elp2/Wild Type
0 h
 4 h
 8 h
 12 h
AGI Locus Gene name Log2 (FC) P Value Log2 (FC) P Value Log2 (FC) P Value Log2 (FC) P Value AGI Description
Major defense genes
At1g64280 NPR1 −0.494 0.001 −1.783 0 −0.389 0.001 −0.074 0.287 NONEXPRESSOR OF PR GENES1
At5g45110 NPR3 −1.024 0.009 −1.869 0.006 – n/a – n/a NPR1-LIKE PROTEIN3
At4g19660 NPR4 – n/a −1.435 0.006 – n/a – n/a NPR1-LIKE PROTEIN4
At4g16890 SNC1 – n/a −2.361 0 – n/a – n/a SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1
At1g02450 NIMIN1 – n/a −3.318 0.017 – n/a 1.142 0.002 NIM-INTERACTING1
At3g25882 NIMIN2 – n/a −2.493 0.034 −1.099 0.001 – n/a NIM-INTERACTING2
At1g74710 ICS1 – n/a −4.154 0.001 – n/a – n/a ISOCHORISMATE SYNTHASE1
At4g39030 EDS5 – n/a −3.815 0.003 – n/a – n/a ENHANCED DISEASE SUSCEPTIBILITY5
At5g13320 PBS3 – n/a −3.979 0.008 – n/a – n/a AVRPPHB SUSCEPTIBLE3
At3g48090 EDS1 – n/a −2.208 0.007 – n/a – n/a ENHANCED DISEASE SUSCEPTIBILITY1
At3g52430 PAD4 – n/a −3.458 0.003 – n/a 1.257 0.002 PHYTOALEXIN DEFICIENT4
At5g14930 SAG101 – n/a −1.055 0.013 – n/a – n/a SENESCENCE-ASSOCIATED GENE101
At4g23570 SGT1A – n/a −3.091 0 – n/a 1.001 0.003 Suppressor of G2 (Two) 1A
At4g14400 ACD6 −2.818 0.023 −3.125 0.011 −1.368 0 – n/a ACCELERATED CELL DEATH6
At2g13810 ALD1 – n/a −4.106 0.002 −3.129 0.002 −2.105 0 AGD2-LIKE DEFENSE RESPONSE PROTEIN1
At1g19250 FMO1 – n/a −4.486 0.004 −2.561 0.005 −1.447 0.001 FLAVIN_DEPENDENT MOMOOXYGENASE1
NPR1 target genes
At2g14610 PR1 −1.024 0.174 2.325 0.151 −6.469 0 −3.246 0.001 PATHOGENESIS-RELATED GENE1
At3g57260 PR2 −2.147 0.18 – n/a −1.93 0 −2.347 0.008 PATHOGENESIS-RELATED GENE2
At1g75040 PR5 −1.37 0 −1.334 0.23 −1.924 0 – n/a PATHOGENESIS-RELATED GENE5
At2g43570 n.a. −2.185 0.131 – n/a −1.882 0.002 – n/a Chitinase, putative
At4g12010 n.a. – n/a −1.31 0.006 – n/a – n/a Disease resistance protein, putative
At4g34480 n.a. – n/a – n/a −1.01 0.003 – n/a Glycosyl hydrolase family 17 protein
At5g43470 RPP8 – n/a −1.14 0.003 – n/a – n/a RECOGNITION OF PERONOSPORA PARASITICA8
At5g57550 XTR3 −1.77 0.001 1.332 0.018 1.362 0 1.256 0.015 XYLOGLUCAN ENDOTRANSGLYCOSYLASE3
At1g08450 CRT3 – n/a −1.653 0.003 −1.293 0 – n/a CALRETICULIN 3; calcium ion binding
At1g09210 CRT2 – n/a – n/a −1.755 0 – n/a Calreticulin2
At1g30900 VSR6 – n/a −2.128 0.023 −1.8 0 – n/a Vacuolar sorting receptor6
At2g34250 Sec61α – n/a – n/a −1.161 0.106 – n/a Protein transport protein, putative
At2g47470 PDIL2-1 – n/a – n/a −1.235 0 – n/a PDI-LIKE2-1; thiol-disulfide exchange intermediate
At4g22670 HIP1 – n/a – n/a −1.084 0.029 – n/a HSP70-INTERACTING PROTEIN1; binding
At4g24190 SHD – n/a – n/a −1.801 0 – n/a SHEPHERD; ATP binding
At5g07340 n.a. – n/a – n/a −1.548 0.007 – n/a Calnexin, putative
At5g42020 BIP – n/a – n/a −1.978 0.001 – n/a LUMINAL BINDING PROTEIN; ATP binding
At5g61790 CNX1 – n/a – n/a −1.878 0 – n/a Calnexin 1
At4g31800 WRKY18 −1.377 0.012 – n/a – n/a – n/a WRKY DNA binding protein 18
At5g22570 WRKY38 −1.34 0.088 – n/a −1.301 0.001 – n/a WRKY DNA binding protein 38
At4g23810 WRKY53 −1.144 0.006 −1.777 0.004 – n/a – n/a WRKY DNA binding protein 53
At2g40750 WRKY54 −1.781 0.022 −3.326 0.002 – n/a – n/a WRKY DNA binding protein 54
At3g01080 WRKY58 – n/a – n/a −1.374 0 – n/a WRKY DNA binding protein 58
At2g21900 WRKY59 – n/a −1.926 0 −1.714 0 1.335 0.004 WRKY DNA binding protein 59
At1g80590 WRKY66 – n/a – n/a −1.365 0.005 – n/a WRKY DNA binding protein 66
At3g56400 WRKY70 −1.666 0.021 −2.197 0.024 – n/a – n/a WRKY DNA binding protein 70

AGI, Arabidopsis Genome Initiative; FC, fold change; n.a., not available; n/a, not applicable; –, less than twofold.