Table 1.

Summary of the species used in the study.

	Species name	ID	Common name	Classification	Species
1	Chlamydomonas reinhardtii	CR	Green algae	Chlorophyte	Chlamydomonadaceae
2	Volvox carteri	VC	Algae	Chlorophyte	Volvoceae
3	Micromonas sp. RCC299	MRC	Micromonas	Chlorophyta	Prasinophyceae
4	Ostreococcus tauri	OT	Microalgae	Prasinophyte	Prasinophyceae
5	Ostreococcus lucimarinus	OL	Microalgae	Prasinophyte	Prasinophyceae
6	Selaginella moellendorffii	SM	Spike moss	Lycophytes	Selaginellaceae
7	Physcomitrella patens	PP	Moss	Lycophytes	Funariaceae
8	Sorghum bicolor	SB	Sorghum	Monocot	Poaceae
9	Zea mays	ZM	Corn	Monocot	Poaceae
10	Brachypodium distachyon	BD	Purple false brome	Monocot	Poaceae
11	Oryza sativa ssp. japonica	OS	Japonica rice	Monocot	Poaceae
12	Oryza sativa ssp. indica	OSI	Indica rice	Monocot	Poaceae
13	Vitis vinifera	VV	Grapevine	Dicot	Vitaceae
14	Theobroma cacao	TC	Cacao	Dicot	Malvaceae
15	Carica papaya	CP	Papaya	Dicot	Caricaceae
16	Arabidopsis thaliana	AT	Arabidopsis	Dicot	Brassicaceae
17	Arabidopsis lyrata	AL	Lyrata	Dicot	Brassicaceae
18	Populus trichocarpa	PT	Poplar	Dicot	Salicaceae
19	Ricinus communis	RC	Castor oil plant	Dicot	Euphorbiaceae
20	Manihot esculenta	ME	Cassava	Dicot	Euphorbiaceae
21	Malus domestica	MD	Apple	Dicot	Rosaceae
22	Fragaria vesca	FV	Strawberry	Dicot	Rosaceae
23	Glycine max	GM	Soybean	Dicot	Fabaceae
24	Lotus japonicus	LJ	Lotus	Dicot	Fabaceae
25	Medicago truncatula	MT	Medicago	Dicot	Fabaceae

Coding genes is estimated by Plaza (http://bioinformatics.psb.ugent.be/plaza/). Relationships among the species considered are presented on the Plaza website (http://bioinformatics.psb.ugent.be/plaza/).