Table 2.
Shikimate and phenylalanine biosynthetic genes and homologs in each species with/without tandem duplicated genes.
| No. ID | 1 CR | 3 MRCC299 | 4 OT | 8 SB | 9 ZM | 10 BD | 11 OS | 12 OSindica |
|---|---|---|---|---|---|---|---|---|
| DHS | Cr17g06460 | Mrcc02g07760 | Ot06g03510 | Sb01g028770 | Zm02g39200 | Bd1g21330 | Os03g27230 | Osi07g35030 |
| Sb01G033590 | Zm04g31550 | Bd1g60750 | Os07g42960 | Osi08g36090 | ||||
| Sb02G039660 | Zm05g06990 | Bd3g33650 | Os08g37790 | Osi10g31830 | ||||
| Sb07G029080 | Bd3g38670 | Os10g41480 | ||||||
| DQS | Cr08g02240 | Mrcc01g05190 | Ot05g01830 | Sb02G031240 | Zm02g34320 | Bd4g36507 | Os09g36800 | Osi09g29080 |
| DHQD | Cr08g04550 | Mrcc01g03580 | Ot12g02660 | Sb08G016970 | Zm03g17940 | Bd4g05897 | Os12g34874 | Osi12g23310 |
| Zm10g05140 | ||||||||
| SK | Cr10g04010 | Mrcc13g02500 | Ot14g03180 | Sb06G030260 | Zm02g02970 | Bd3g59237 | Os04g54800 | Osi02g49680 |
| Zm04g27840 | Bd5g23460 | |||||||
| Zm05g40530 | ||||||||
| SKL1 | Sb08G018630 | Zm01g26660 | Bd2g03680 | Os01g01302 | ||||
| SKL2 | Mrcc02g03490 | Ot07g01450 | Sb01G027930 | Zm01g22640 | Bd3g34245 | Os10g42700 | ||
| ESPS | Cr03g06830 | Mrcc13g01100 | Ot14g02430 | Sb10G002230 | Zm09g05500 | Bd1g51660 | Os06g04280 | Osi06g03190 |
| CS | Cr01g12390 | Mrcc05g01430 | Ot02g06020 | Sb01G040790 | Zm01g10020 | Bd1g67790 | Os03g14990 | Osi03g13340 |
| Zm09g24540 | ||||||||
| CM | Cr03g01600 | Mrcc08g05060 | Ot08g02860 | Sb03G035460 | Zm03g31000 | Bd2g50800 | Os01g55870 | Osi01g52850 |
| Sb04G005480 | Zm05g21270 | Bd3g06050 | Os02g08410 | Osi02g08160 | ||||
| Zm08g34320 | Os12g38900 | |||||||
| Zm08g34330 | ||||||||
| PAT | Cr02g15900 | Mrcc06g00860 | Ot16g00690 | Sb03G041180 | Zm03g25600 | Bd2g24300 | Os01g65090 | Osi01g61700 |
| Sb09G021360 | Zm08g15210 | Bd2g56330 | ||||||
| ADT | Cr06g02760 | Mrcc01g05870 | Ot01g01250 | Sb01G038740 | Zm01g12020 | Bd5g09020 | Os04g33390 | Osi03g16350 |
| Sb06G015310 | Zm02g16320 | Bd5g09030 | Os03g17730 | Osi04g25440 | ||||
| Zm10g16000 | Bd1g16517 | Os07g49390 | Osi07g41390 | |||||
| Bd1g65800 | ||||||||
| No. ID | 13 VV | 14 TC | 16 AT | 17 AL | 18 PT | 21 MD | 22 FV | 23 GM | 24 LJ | 25 MT |
|---|---|---|---|---|---|---|---|---|---|---|
| DHS | Vv00g09200 | Tc01g008590 | At1g22410 | Al1g23930 | Pt01g14860 | Md00g000730 | Fv0g22320 | Gm02g37080 | Lj1g002520 | Mt2g009080 |
| Vv00g17890 | Tc01g012940 | At4g33510 | Al7g02250 | Pt02g09760 | Md00g361080 | Fv5g19610 | Gm06g10670 | Mt5g064500 | ||
| Vv18g03830 | Tc02g011250 | At4g39980 | Al7g07720 | Pt05g07260 | Md01g001320 | Gm14g35370 | ||||
| Tc03g024120 | Pt05g16320 | Md04g002280 | Gm15g06020 | |||||||
| Tc08g008780 | Pt07g04970 | Md05g021570 | ||||||||
| Md05g025390 | ||||||||||
| Md10g003880 | ||||||||||
| Md11g021260 | ||||||||||
| DQS | Vv04g00350 | Tc01g001360 | At5g66120 | Al8g34560 | Pt05g11110 | Md00g089850 | Fv1g13270 | Gm01g36890 | Lj2g022420 | Mt5g022580 |
| Gm11g08350 | ||||||||||
| DHQD | Vv05g03610 | Tc04g027300 | At3g06350 | Al3g06450 | Pt10g01690 | Md00g196450 | Fv1g19500 | Gm01g20760 | Lj4g005930 | Mt4g090620 |
| Vv14g04450 | Tc05g024340 | Pt13g02880 | Md00g199470 | Fv6g07230 | Gm20g37400 | |||||
| Vv14g04460 | Tc05g024370 | Md00g208810 | Fv6g07240 | |||||||
| Md01g014110 | ||||||||||
| Md01g014130 | ||||||||||
| Md04g017400 | ||||||||||
| Md15g026460 | ||||||||||
| SK | Vv00g22160 | Tc01g010070 | At2g21940 | Al4g01190 | Pt02g06000 | Md00g396950 | Fv6g01580 | Gm04g39700 | Lj1g014890 | |
| Vv07g06350 | At4g39540 | Al7g01530 | Pt05g08460 | Md02g009820 | Gm04g39710 | |||||
| Pt07g06400 | Gm05g31730 | |||||||||
| Gm08g14980 | ||||||||||
| SKL1 | Vv14g14000 | Tc04g004710 | At3g26900 | Al5g05650 | Pt17g08780 | Fv6g51520 | Gm02g08050 | Lj1g008480 | ||
| Gm16g27060 | ||||||||||
| SKL2 | Vv02g01940 | Tc03g029930 | At2g35500 | Al4g20870 | Pt03g08570 | Md00g061570 | Fv0g29740 | Gm01g01890 | Lj3g020970 | Mt1g009450 |
| Md00g432830 | Fv2g18080 | Lj3g020980 | Mt5g029550 | |||||||
| Md06g002680 | ||||||||||
| ESPS | Vv15g09330 | Tc01g037810 | At1g48860 | Al1g42610 | Pt02g14550 | Md00g030870 | Fv7g11420 | Gm01g33660 | Lj3g025840 | Mt4g024620 |
| Vv15g09350 | At2g45300 | Al4g33160 | Pt14g06200 | Md00g271560 | Gm03g03190 | |||||
| CS | Vv06g05280 | Tc10g005370 | At1g48850 | Al1g42550 | Pt08g03850 | Md00g355380 | Fv4g18660 | Gm10g35560 | Lj0g038950 | Mt1g095160 |
| Vv13g03240 | Al3g19880 | Pt10g21700 | Md01g008950 | Fv4g18670 | Gm20g31980 | Lj0g284550 | Mt1g095240 | |||
| Md08g005430 | Fv7g23950 | Mt1g095250 | ||||||||
| Fv7g24040 | ||||||||||
| CM | Vv01g02110 | Tc02g032570 | At1g69370 | Al2g17620 | Pt10g15830 | Md00g250450 | Fv0g04690 | Gm13g05830 | Lj5g005890 | Mt1g013820 |
| Vv04g13080 | Tc04g009770 | At3g29200 | Al5g08750 | Pt17g12090 | Md00g329990 | Fv2g52320 | Gm14g11870 | Lj5g005900 | Mt5g043210 | |
| Vv14g02700 | Tc09g001490 | At5g10870 | Al6g10610 | Pt18g02330 | Md01g020010 | Fv6g43680 | Gm17g33940 | |||
| Md16g003330 | Gm19g03290 | |||||||||
| Md17g004580 | ||||||||||
| PAT | Vv07g05790 | Tc01g009420 | At2g22250 | Al4g01710 | Pt05g07910 | Md00g135490 | Fv6g00440 | Gm05g31490 | Lj6g003720 | Mt8g091280 |
| Vv18g03130 | Pt07g05690 | Md00g246930 | Gm08g14720 | |||||||
| Md00g304630 | Gm11g36190 | |||||||||
| Gm11g36200 | ||||||||||
| ADT | Vv06g04790 | Tc02g034990 | At1g08250 | Al1g12100 | Pt00g13690 | Md00g099570 | Fv3g01120 | Gm11g15750 | Lj3g029800 | Mt2g088130 |
| Vv10g00970 | Tc06g019290 | At1g11790 | Al3g08080 | Pt04g01150 | Md00g099580 | Fv3g16180 | Gm11g19430 | Lj4g001780 | Mt4g055310 | |
| Vv12g10860 | Tc09g026620 | At2g27820 | Al4g12300 | Pt04g18820 | Md00g456520 | Fv3g29940 | Gm12g07720 | Mt4g061070 | ||
| Tc09g028840 | At3g07630 | Al5g12520 | Pt08g19820 | Md05g001400 | Gm12g09050 | Mt4g132250 | ||||
| At3g44720 | Al6g22310 | Pt09g14910 | Md15g019040 | Gm12g30660 | ||||||
| At5g22630 | Gm12g31940 | |||||||||
| Gm17g01610 | ||||||||||
Orthologous genes were estimated by BLAST search in Plaza website. Bold indicates tandem gene duplication.