Table 2.
Summary statistics of genetic variation at 22 SSR loci and 353 SNP loci in the entire FEM germplasm collection and its four grape subpopulations
| Markers | Sample | N | n | A | a | AE | HE | HO | F | MAF |
|---|---|---|---|---|---|---|---|---|---|---|
| SSR |
Total |
1085 |
1036.7 |
499 |
22.682 |
6.191 |
0.814 |
0.743 |
0.090 |
- |
| Sativa |
733 |
715.5 |
362 |
16.455 |
5.292 |
0.78 |
0.761 |
0.025 |
- |
|
| Sylvestris |
139 |
136.5 |
234 |
10.636 |
3.618 |
0.699 |
0.627 |
0.104 |
- |
|
| Rootstocks |
127 |
110.3 |
412 |
18.727 |
8.199 |
0.838 |
0.734 |
0.124 |
- |
|
| Hybrids |
86 |
74.5 |
294 |
13.364 |
5.682 |
0.81 |
0.796 |
0.011 |
- |
|
| SNP |
Total |
1072 |
1027.0 |
706 |
2.000 |
1.588 |
0.344 |
0.309 |
0.093 |
0.25846 |
| Sativa |
728 |
703.1 |
704 |
1.994 |
1.589 |
0.345 |
0.349 |
−0.005 |
0.25809 |
|
| Sylvestris |
137 |
131.8 |
687 |
1.946 |
1.421 |
0.266 |
0.251 |
0.046 |
0.19964 |
|
| Rootstocks |
122 |
111.0 |
669 |
1.895 |
1.157 |
0.116 |
0.099 |
0.090 |
0.08193 |
|
| Hybrids | 85 | 81.0 | 696 | 1.972 | 1.565 | 0.335 | 0.337 | −0.014 | 0.25668 |
Total – entire germplasm collection (pooled sample treated as a single population); N – sample size; n – mean sample size over loci; A – number of different alleles; a – mean number of alleles per locus; AE – effective number of alleles; HE – unbiased expected heterozygosity; HO – observed heterozygosity; F – fixation index (inbreeding coefficient); MAF – minor allele frequency.