Table 3.
CHR | SNP | CHR position | Alleles | Frequency in Cases | Frequency in Controls | p-value |
---|---|---|---|---|---|---|
2 | rs974389 | 102303413 | C/T | 0.3235 | 0.3557 | 0.7116 |
2 | rs12712141 | 102319499 | C/T | 0.5294 | 0.4375 | 0.2933 |
2 | rs1041973 | 102321900 | A/C | 0.2812 | 0.5106 | 0.02247 |
2 | rs1420101 | 102324148 | A/G | 0.5882 | 0.3814 | 0.02044 |
2 | rs12712142 | 102327016 | A/C | 0.5588 | 0.3866 | 0.04901 |
2 | rs1921622 | 102332499 | A/G | 0.5588 | 0.2526 | 0.000525 |
2 | rs10208293 | 102332742 | G/A | 0.6176 | 0.4794 | 0.1404 |
2 | rs4988955 | 102334360 | A/G | 0.5 | 0.2835 | 0.009945 |
2 | rs4988956 | 102334439 | G/A | 0.5 | 0.2835 | 0.009945 |
2 | rs10192036 | 102334643 | C/A | 0.5 | 0.2835 | 0.009945 |
2 | rs10204137 | 102334644 | A/G | 0.5 | 0.2835 | 0.009945 |
2 | rs10192157 | 102334788 | C/T | 0.5 | 0.2835 | 0.009945 |
2 | rs10206753 | 102334794 | T/C | 0.5 | 0.2835 | 0.009945 |
2 | rs13015714 | 102338297 | G/T | 0.05882 | 0.1094 | 0.3399 |
2 | rs3755276 | 102344891 | G/A | 0.5882 | 0.3402 | 0.005714 |
2 | §rs3771171 | 102352382 | G/A | 0.375 | 0.09278 | 5.75E-06 |
2 | rs7579737 | 102353793 | G/A | 0.2353 | 0.3053 | 0.3804 |
2 | rs2270297 | 102359107 | A/G | 0.1176 | 0.1031 | 0.786 |
2 | rs7558013 | 102359238 | T/G | 0.1471 | 0.2577 | 0.1678 |
2 | rs4851004 | 102375969 | C/T | 0.5625 | 0.2553 | 0.000791 |
2 | rs2293225 | 102402321 | T/C | 0.2647 | 0.07216 | 0.000263 |
2 | rs6743516 | 102402767 | A/G | 0.5588 | 0.2577 | 0.000635 |
2 | rs13021177 | 102422925 | A/G | 0.6176 | 0.3802 | 0.003749 |
2 | rs17027173 | 102423475 | A/G | 0.1471 | 0.2552 | 0.1681 |
2 | §rs3771150 | 102427283 | T/C | 0.3824 | 0.09794 | 3.87E-06 |
2 | rs11465730 | 102433290 | A/G | 0.3235 | 0.4639 | 0.126 |
2 | rs11886793 | 102438652 | G/T | 0.2647 | 0.3802 | 0.1891 |
These are within 50kb upstream and downstream the two significant SNPs. Their chromosome (CHR) position, frequency in cases and controls, and p-values are shown;
The two significant SNPs are shown in bold; minor alleles are underlined.