Table 4. Number of matches from complete transcriptome (237,340 transcripts) and unigene set (119,014 transcripts) to five databases.
SwissProt | RefSeq plant | Uniprot | TAIR proteins | Genbank | |
Total matches to database | 204575 | 214605 | 208399 | 224225 | 237271 |
Unique matches (E-value <1e−3) | 122003 | 166440 | 166216 | 155596 | 185243 |
Percentage of all transcripts | 51.40 | 70.13 | 70.03 | 65.56 | 78.05 |
Unique unigene matches (E-value <1e−3) | 49013 | 66484 | 68473 | 64051 | 81920 |
Percentage of all unigenes | 41.18 | 55.86 | 57.53 | 53.82 | 68.83 |