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. 2013 Mar 28;8(3):e60440. doi: 10.1371/journal.pone.0060440

Table 4. Enriched GO terms when comparing candidate genes to the whole genome using GeneMerge1.2.

GO term Description Pop-frec CR-frec ratio P value
GO:0000003 reproduction 210/27430 101/9829 1.34 9.08E-3
GO:0044421 extracellular region part 361/27430 171/9829 1.32 2.12E-4
GO:0016265 death 403/27430 182/9829 1.26 3.49E-3
GO:0022414 reproductive process 208/27430 101/9829 1.36 5.76E-3
GO:0032991 macromolecular complex 1327/27430 596/9829 1.25 1.03E-10
GO:0005623 cell 5024/27430 2264/9829 1.26 8.171E-49
GO:0048519 negative regulation of biological process 669/27430 306/9829 1.28 3.34E-06
GO:0050896 response to stimulus 1500/27430 693/9829 1.30 7.77E-16
GO:0044422 organelle part 1953/27430 885/9829 1.26 1.32E-17
GO:0051234 establishment of localization 1094/27430 494/9829 1.26 3.30E-09
GO:0031974 membrane-enclosed lumen 728/27430 340/9829 1.30 3.68E-08
GO:0022610 biological adhesion 198/27430 94/9829 1.32 0.0261
GO:0008152 metabolic process 2813/27430 1291/9829 1.28 1.81E-29
GO:0044464 cell part 5024/27430 2264/9829 1.26 8.17E-49
GO:0003824 catalytic activity 1991/27430 919/9829 1.29 2.99E-21
GO:0005488 binding 3393/27430 1534/9829 1.26 1.07E-31
GO:0009987 cellular process 3860/27430 1739/9829 1.26 1.49E-35
GO:0005215 transporter activity 400/27430 180/9829 1.26 4.84E-3
GO:0032502 developmental process 896/27430 409/9829 1.27 2.85E-08
GO:0002376 immune system process 390/27430 175/9829 1.25 7.19E-3
GO:0008283 cell proliferation 292/27430 142/9829 1.36 2.41E-4
GO:0005576 extracellular region 697/27430 320/9829 1.28 1.06E-06
GO:0023052 signaling 904/27430 424/9829 1.31 1.34E-10
GO:0048518 positive regulation of biological process 785/27430 359/9829 1.28 2.51E-07
GO:0032501 multicellular organismal process 1124/27430 494/9829 1.23 3.43E-07
GO:0051704 multi-organism process 189/27430 92/9829 1.36 0.0102
GO:0043226 organelle 3372/27430 1509/9829 1.25 1.65E-28
GO:0060089 molecular transducer activity 309/27430 151/9829 1.36 8.61E-05
GO:0050789 regulation of biological process 1900/27430 871/9829 1.28 5.19E-19
GO:0004872 receptor activity 347/27430 156/9829 1.25 0.0144
GO:0030234 enzyme regulator activity 261/27430 122/9829 1.30 9.57E-3
GO:0040011 locomotion 245/27430 115/9829 1.31 0.012
GO:0051179 localization 1269/27430 575/9829 1.26 4.01E-11
GO:0040007 growth 165/27430 81/9829 1.37 0.0170
GO:0071840 cellular component organization or biogenesis 1015/27430 474/9829 1.30 1.57E-11
GO:0065007 biological regulation 2029/27430 927/9829 1.28 8.67E-20

This table describes second GO terms significantly enriched in core regions based on GeneMerge1.2 software. 36 terms are detected to be significant here. Pop-frec describes the frequency of genes in the population with this term, and CR-frec describes the frequency of genes in the core regions with this term. Ratio is calculated by the comparison of a term within the core regions to that in genome wide. P value here is a Bonferroni corrected P value.