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. 2013 Mar 28;9(3):e1003396. doi: 10.1371/journal.pgen.1003396

Table 1. Number of genes that pass R2 threshold.

R2 threshold KNN Elastic-Net Combined Single SNP All models
0.05 273/622 388/640 401/493 533/2659 700/2730
0.1 152/350 239/389 213/265 272/685 364/753
0.2 47/125 114/189 82/105 100/179 143/245
0.3 18/57 54/94 35/42 50/72 73/115
0.4 8/29 32/55 15/20 14/25 36/62
0.5 4/17 14/28 6/11 5/7 16/29

Models are: K-nearest-neighbor (KNN); Regularized Linear model (Elastic-Net); single best-SNP (Single SNP) or in any one of them (All models). Shown are the number of genes that pass training and test R2 threshold (test/training) using the different models in the Cross-Pop cross-validation scheme.