Table 2. Comparison of non-coding sequence motifs between HAdV-B14p1 strains BJ430 and 303600.
MOTIF | function | BJ430 | 303600 | bp |
CATCAT...TGACGT | inverted terminal repeat | 1–136 | 1–136 | 136 |
ATAATATACC | DNApol-pTP bingding site | 9–18 | 9–18 | 10 |
TGGAATGGTGCCAA | NFI bingding site | 26–39 | 26–39 | 14 |
ctgtgtgg | Sp1 recognition site | 72–79 | 72–79 | 8 |
TATTTA | TATA signal for E1A | 493–498 | 493–498 | 6 |
AATAAA | polyA signal for E1A | 1517–1522 | 1517–1522 | 6 |
TATATA | TATA signal for E1B | 1574–1579 | 1574–1579 | 6 |
AGTAAA | polyA signal for E1B | 3467–3472 | 3467–3472 | 6 |
TAAGGT | TATA signal for IX | 3415–3420 | 3415–3420 | 6 |
AAAAAT | polyA signal for IX | 3470–3475 | 3470–3475 | 6 |
TTGATT | polyA signal for IVa2 | 3963–3968 | 3963–3968 | 6 |
TGATTGGCTT | inverted CAAT box for MLP | 5858–5867 | 5858–5867 | 10 |
TTCACGTGA | upstream element for MLP | 5877–5885 | 5878–5886 | 9 |
GCTGGGGGGG | MAZ bingding site for MLP | 5898–5907 | 5899–5908 | 10 |
TATAAAA | TATA signal for major late promoter(MLP) | 5908–5914 | 5909–5915 | 7 |
GGGGGCGGTTC | MAZ/SP1 bingding site for MLP | 5915–5925 | 5916–5926 | 11 |
TCACTGT | initiator element for MLP | 5937–5943 | 5938–5944 | 7 |
TTGTCAGTTTC | DE1 for MLP | 6024–6034 | 6025–6035 | 11 |
AACGAGGAGGATTTGA | DE2a & DE2b for MLP | 6039–6054 | 6040–6055 | 16 |
AATAAA | polyA signal for L1 | 13626–13631 | 13624–13629 | 6 |
AATAAA | polyA signal for L2 | 17337–17342 | 17335–17340 | 6 |
AATAAA | polyA signal for L3 | 21781–21786 | 21780–21785 | 6 |
AATAAA | polyA signal for E2A | 21793–21798(-) | 21792–21797(-) | 6 |
TATAAA | TATA box for E3 | 26856–26861 | 26855–26860 | 6 |
AATAAA | polyA signal for L4 | 27335–27340 | 27334–27339 | 6 |
AATAAA | polyA signal for E3 | 30597–30602 | 30597–30602 | 6 |
AATAAA | polyA signal for L5 | 31763–31768 | 31763–31768 | 6 |
AATAAA | polyA signal for E4 | 31779–31784 | 31779–31784 | 6 |
TATATATA | TATA box for E4 | 34453–34460 | 34454–34461 | 8 |
AACCTC…ATGATG | inverted terminal repeat | 34626–34762 | 34627–34763 | 137 |
Nucleotide signatures and putative functions are indicated, along with locations noted for the genome.