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. 2013 Mar 29;8(3):e57531. doi: 10.1371/journal.pone.0057531

Table 3. Genetic main effects and QE interaction effects from the QTLs of embryo and maternal plant for essential amino acid contents in cottonseeds.

Traits QTL ae de am aeE1 aeE2 deE1 deE2 amE1 amE2
Leu qLeu-5-1 −0.0091** −0.0213** 0.0067** −0.0005 0.0006 −0.0051 0.0050 0.0005 −0.0005
qLeu-5-2 −0.0258** 0.0051 0.0126** 0.0002 0.0067* −0.0069 0.0067 −0.0002 −0.0064*
qLeu-6 0.0080** 0.0235** −0.0014 −0.0003 −0.0005 0.0088* −0.0091 0.0003 0.0005
qLeu-LG5 −0.0195** −0.0086** 0.0182** −0.0003 −0.0013 −0.0041 0.0041 0.0003 0.0014
qLeu-LG7 −0.0176** −0.0074** 0.0053** 0.0005 0.0002 0.0006 −0.0006 −0.0005 −0.0002
Phe qPhe-5-1 −0.0164** −0.0283** 0.0121** −0.0065* 0.0073* −0.0029 0.0029 0.0063* −0.0072**
qPhe-5-2 −0.0291** 0.0008 0.0054 0.0004 0.0040 −0.0191** 0.0202** −0.0003 −0.0041
qPhe-6 0.0134** 0.0229** −0.0061** −0.0005 −0.0005 0.0079* −0.0077* 0.0005 0.0006
qPhe-8 0.0118** 0.0027 −0.0193** 0.0004 −0.0001 0.0006 −0.0006 −0.0004 0.0001
qPhe-15 0.0169** −0.0091** −0.0203** 0.0005 −0.0043* −0.0003 0.0004 −0.0005 0.0041
qPhe-23 0.0223** −0.0176** −0.0115** 0.0005 −0.0098** −0.0035 0.0036 −0.0005 0.0094*
qPhe-LG5 −0.0252** −0.0110** 0.0232** −0.0002 −0.0009 −0.0006 0.0007 0.0002 0.0009
qPhe-LG7 −0.0123** −0.0066* 0.0000 0.0003 −0.0006 0.0028 −0.0027 −0.0003 0.0006
Thr qThr-LG6 −0.0035** 0.0025 −0.0017 0.0003 0.0001 0.0019 −0.0019 −0.0003 −0.0001
qThr-22 −0.0014 0.0005 −0.0014 −0.0002 0.0047** 0.0005 −0.0005 0.0002 −0.0046**
qThr-LG12 −0.008** −0.0067* 0.0047** 0.0000 0.0016 −0.0033 0.0031 0.0000 −0.0016
Val qVal-18 −0.0117** −0.0118** 0.0058* −0.005* 0.0079** −0.0002 0.0002 0.0054* −0.008**
qVal-22-1 −0.0009 −0.0034 −0.0024 0.0000 0.0064** 0.0006 −0.0006 0.0001 −0.0063**
qVal-22-2 −0.0021 0.0099** −0.0020 0.0001 0.0058** −0.0003 0.0003 −0.0001 −0.0054**
qVal-23 0.009** −0.0075** −0.0020 0.0030 −0.008** −0.0002 0.0002 −0.0031 0.0082**
qVal-LG5 0.0011 −0.0014 0.0097** −0.0040 −0.0004 −0.0001 0.0001 0.0039 0.0004
qVal-LG7 −0.0064** −0.0053 0.0024 −0.0003 −0.0058** 0.0001 0.0000 0.0002 0.0058**
Met qMet-LG6 −0.0017** 0.0015 −0.0005 0.0003 0.0000 0.0009 −0.0009 −0.0003 0.0000
qMet-LG11 −0.0028** 0.0036** 0.0009* −0.0001 0.0009* 0.0014 −0.0014 0.0001 −0.0009
qMet-LG12 −0.0017** −0.0018 0.0007 −0.0021** 0.0023** −0.0024 0.0025* 0.002** −0.0023**
Ile qIle-5 −0.0041** −0.011** 0.0033** −0.0001 0.0002 −0.0038 0.0038 0.0001 −0.0002
qIle-LG11 0.0031** 0.0028 −0.0088** 0.0007 0.0014 0.0012 −0.0012 −0.0007 −0.0013
qIle-22 0.0014 −0.0022 −0.0043** 0.0001 0.0046** 0.0021 −0.0021 −0.0001 −0.0048**
qIle-23 0.0051** −0.0057** −0.0001 0.0003 −0.0041** −0.0003 0.0003 −0.0003 0.004**
qIle-LG5-1 0.0056** −0.0108** −0.0091** 0.0004 0.0000 −0.0003 0.0003 −0.0004 0.0000
qIle-LG5-2 0.0012 0.0002 0.0055** −0.0019 −0.0014 −0.0002 0.0002 0.0019 0.0014
Lys qLys-6 0.0048** 0.0122** 0.0003 −0.0003 −0.0010 0.0050 −0.0050 0.0003 0.0009
qLys-22 −0.0016 −0.0018 −0.0019 −0.0006 0.0064** 0.0023 −0.0023 0.0006 −0.0066**
qLys-LG5 −0.013** −0.0007 0.0098** −0.0004 −0.0008 −0.0019 0.0018 0.0004 0.0007
qLys-LG11 −0.0009 0.0119** −0.0045** 0.0002 0.0013 0.0069* −0.0069* −0.0002 −0.0013

Notes: ae, embryo additive main effect; de, embryo dominance main effect; am, Maternal additive main effect; aeE1 and aeE2, embryo additive interaction effects in environment 1 and environment 2; deE1 and dmE2, embryo dominance interaction effects in environment 1 and environment 2, amE1 and amE2 maternal additive interaction effects in environment 1 and environment 2, respectively. *P = 0.05; **P = 0.01.