Table 1.
Major allele | Minor allele | Genotype distributiona | All | |||||||||||
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MAFc | Cases | Controls | (744 cases, 1,477 controls) | |||||||||||
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Pathway | Gene | SNP | (A) | (a) | (%) | AA | Aa | aa | AA | Aa | aa | OR | (95% CI) | p-value |
MMRb | MLH1 | rs1800734 | G | A | 23.0% | 470 | 212 | 46 | 858 | 520 | 66 | 0.91 | (0.78, 1.06) | 0.215 |
MMR | MLH1 | rs1540354 | T | A | 17.0% | 499 | 226 | 18 | 1026 | 399 | 50 | 1.05 | (0.89, 1.24) | 0.553 |
MMR | MLH1 | rs4579 | G | A | 45.0% | 224 | 361 | 159 | 454 | 719 | 304 | 1.03 | (0.91, 1.17) | 0.652 |
MMR | MSH2 | rs10188090 | G | A | 37.0% | 275 | 366 | 102 | 576 | 706 | 194 | 1.06 | (0.93, 1.21) | 0.394 |
MMR | MSH2 | rs2059520 | A | G | 34.0% | 299 | 355 | 84 | 626 | 675 | 166 | 1.05 | (0.92, 1.20) | 0.442 |
MMR | MSH2 | rs2303428 | A | G | 9.0% | 589 | 142 | 13 | 1204 | 266 | 6 | 1.24 | (1.01, 1.52) | 0.043 |
MMR | MSH2 | rs12998837 | T | A | 13.0% | 532 | 165 | 12 | 1068 | 313 | 32 | 1.00 | (0.83, 1.21) | 0.991 |
MMR | MSH2 | rs6544991 | A | C | 18.0% | 506 | 220 | 17 | 1008 | 413 | 52 | 0.97 | (0.82, 1.14) | 0.699 |
MMR | MSH2 | rs13425206 | C | A | 4.0% | 690 | 53 | 1 | 1356 | 118 | 2 | 0.90 | (0.65, 1.24) | 0.509 |
MMR | MSH2 | rs17036577 | A | G | 9.0% | 623 | 117 | 4 | 1227 | 241 | 8 | 0.96 | (0.76, 1.20) | 0.723 |
MMR | MSH2 | rs1863332 | A | C | 8.0% | 614 | 120 | 9 | 1239 | 226 | 12 | 1.09 | (0.88, 1.36) | 0.423 |
MMR | MSH2 | rs1981929 | A | G | 41.0% | 272 | 348 | 124 | 513 | 712 | 251 | 0.95 | (0.84, 1.08) | 0.459 |
MMR | MSH2 | rs4638843 | G | C | 12.0% | 581 | 151 | 11 | 1135 | 313 | 27 | 0.92 | (0.76, 1.12) | 0.41 |
MMR | MSH2 | rs4952887 | G | A | 8.0% | 627 | 108 | 9 | 1255 | 209 | 11 | 1.08 | (0.86, 1.35) | 0.506 |
MMR | MSH2 | rs6741393 | G | A | 3.0% | 697 | 45 | 2 | 1380 | 92 | 2 | 1.00 | (0.71, 1.42) | 0.992 |
MMR | MSH2 | rs6753135 | G | A | 12.0% | 579 | 152 | 12 | 1139 | 317 | 19 | 0.98 | (0.81, 1.19) | 0.828 |
MMR | MSH2 | rs10191478 | G | T | 43.0% | 229 | 376 | 139 | 477 | 730 | 270 | 1.04 | (0.92, 1.18) | 0.54 |
MMR | MSH2 | rs4987188 | G | A | 2.0% | 713 | 31 | 0 | 1428 | 47 | 1 | 1.29 | (0.82, 2.04) | 0.27 |
MMR | MSH4 | rs5745325 | G | A | 28.0% | 384 | 306 | 54 | 773 | 576 | 128 | 0.98 | (0.86, 1.13) | 0.797 |
MMR | MSH4 | rs5745433 | A | C | 26.0% | 424 | 247 | 69 | 823 | 547 | 106 | 1.02 | (0.89, 1.17) | 0.752 |
MMR | MSH4 | rs3819949 | A | G | 34.0% | 339 | 297 | 91 | 633 | 614 | 188 | 0.94 | (0.82, 1.07) | 0.333 |
MMR | MSH4 | rs2047435 | G | A | 13.0% | 552 | 173 | 17 | 1110 | 343 | 22 | 1.06 | (0.89, 1.28) | 0.507 |
MMR | MSH4 | rs1146644 | G | A | 42.0% | 249 | 363 | 131 | 515 | 683 | 278 | 1.00 | (0.88, 1.13) | 0.995 |
MMR | MSH4 | rs1498313 | A | G | 40.0% | 275 | 327 | 141 | 528 | 717 | 230 | 1.05 | (0.92, 1.19) | 0.477 |
MMR | MSH4 | rs5745513 | T | A | 8.0% | 616 | 122 | 4 | 1248 | 219 | 8 | 1.10 | (0.88, 1.39) | 0.39 |
MMR | MSH4 | rs5745549 | G | A | 3.0% | 690 | 53 | 1 | 1388 | 85 | 3 | 1.19 | (0.85, 1.67) | 0.317 |
MMR | MSH5 | rs6905572 | G | A | 13% | 572 | 162 | 10 | 1120 | 333 | 24 | 0.95 | (0.79, 1.15) | 0.621 |
MMR | MSH5 | rs3131379 | G | A | 11% | 548 | 180 | 16 | 1166 | 292 | 15 | 1.37 | (1.13, 1.65) | 0.001 |
MMR | MSH5 | rs707937 | C | G | 20% | 477 | 236 | 29 | 948 | 469 | 56 | 1.01 | (0.86, 1.18) | 0.884 |
MMR | MSH5 | rs707938 | A | G | 32% | 322 | 318 | 104 | 681 | 635 | 161 | 1.15 | (1.01, 1.31) | 0.038 |
MMR | MSH5 | rs707939 | C | A | 35% | 326 | 343 | 73 | 620 | 673 | 176 | 0.91 | (0.80, 1.04) | 0.184 |
MMR | MSH5 | rs2299851 | G | A | 10% | 604 | 133 | 5 | 1202 | 256 | 17 | 0.99 | (0.80, 1.22) | 0.928 |
MMR | MSH5 | rs3117572 | G | A | 17% | 514 | 201 | 29 | 1014 | 416 | 47 | 1.00 | (0.85, 1.18) | 0.999 |
MMR | MSH5 | rs3131382 | G | A | 6% | 645 | 80 | 6 | 1273 | 164 | 4 | 1.04 | (0.80, 1.35) | 0.76 |
MMR | MSH5 | rs1802127 | C | T | 2% | 716 | 28 | 0 | 1427 | 49 | 1 | 1.10 | (0.69, 1.76) | 0.683 |
MMR | MSH6 | rs1800932 | A | G | 18% | 498 | 220 | 25 | 990 | 428 | 53 | 1.00 | (0.85, 1.18) | 0.984 |
MMR | MSH6 | rs1800937 | G | A | 11% | 599 | 136 | 9 | 1169 | 297 | 10 | 0.95 | (0.77, 1.17) | 0.615 |
MMR | MSH6 | rs1800935 | A | G | 29% | 381 | 289 | 66 | 736 | 604 | 125 | 0.97 | (0.84, 1.11) | 0.641 |
MMR | MSH6 | rs2710163 | A | G | 39% | 278 | 340 | 124 | 551 | 690 | 233 | 1.02 | (0.90, 1.16) | 0.748 |
MMR | MSH6 | rs2348244 | A | G | 14% | 545 | 185 | 13 | 1084 | 358 | 33 | 0.98 | (0.82, 1.18) | 0.856 |
MMR | MSH6 | rs3136245 | G | A | 19% | 488 | 226 | 27 | 960 | 465 | 48 | 1.00 | (0.85, 1.17) | 0.972 |
MMR | MSH6 | rs330792 | A | C | 11% | 565 | 170 | 9 | 1156 | 307 | 14 | 1.13 | (0.93, 1.37) | 0.23 |
MMR | MSH6 | rs1800936 | C | T | 13% | 574 | 155 | 15 | 1110 | 350 | 17 | 0.94 | (0.77, 1.13) | 0.501 |
MMR | MSH6 | rs3136329 | A | G | 42% | 242 | 359 | 140 | 481 | 731 | 259 | 1.03 | (0.90, 1.16) | 0.701 |
BERb | APEX1 | rs1760945 | C | T | 8% | 637 | 100 | 4 | 1249 | 213 | 10 | 0.92 | (0.73, 1.17) | 0.509 |
BER | APEX1 | rs1760944 | C | A | 39% | 270 | 352 | 119 | 547 | 694 | 231 | 1.03 | (0.91, 1.18) | 0.607 |
BER | APEX1 | rs3136817 | T | C | 25% | 411 | 276 | 57 | 840 | 541 | 96 | 1.08 | (0.93, 1.24) | 0.313 |
BER | APEX1 | rs1130409 | A | C | 47% | 192 | 361 | 190 | 413 | 723 | 338 | 1.10 | (0.98, 1.25) | 0.116 |
BER | LIG3 | rs3135962 | A | C | 7% | 647 | 95 | 2 | 1264 | 207 | 6 | 0.91 | (0.71, 1.16) | 0.443 |
BER | LIG3 | rs3135989 | A | C | 6% | 644 | 97 | 2 | 1301 | 174 | 1 | 1.17 | (0.90, 1.51) | 0.249 |
BER | LIG3 | rs2074516 | G | C | 10% | 598 | 135 | 8 | 1184 | 276 | 17 | 0.96 | (0.78, 1.18) | 0.696 |
BER | LIG3 | rs4796030 | C | A | 42% | 242 | 377 | 123 | 486 | 730 | 261 | 0.99 | (0.87, 1.13) | 0.904 |
BER | LIG3 | rs1052536 | G | A | 47% | 189 | 396 | 156 | 415 | 742 | 320 | 1.04 | (0.91, 1.18) | 0.584 |
BER | MBD4 | rs3138360 | G | A | 6% | 666 | 77 | 1 | 1292 | 174 | 3 | 0.85 | (0.64, 1.12) | 0.253 |
BER | MBD4 | rs140696 | G | A | 9% | 604 | 137 | 3 | 1210 | 257 | 10 | 1.04 | (0.84, 1.29) | 0.727 |
BER | MBD4 | rs9821282 | G | A | 16% | 537 | 185 | 20 | 1035 | 408 | 34 | 0.94 | (0.79, 1.11) | 0.453 |
BER | MPG | rs1013358 | T | C | 14% | 577 | 153 | 14 | 1093 | 354 | 30 | 0.86 | (0.71, 1.04) | 0.110 |
BER | MPG | rs2562182 | A | G | 16% | 559 | 164 | 18 | 1044 | 400 | 32 | 0.84 | (0.70, 1.00) | 0.050 |
BER | MPG | rs743725 | C | T | 19% | 518 | 203 | 23 | 978 | 450 | 49 | 0.88 | (0.75, 1.04) | 0.140 |
BER | MUTYH | rs3219489 | G | C | 25% | 417 | 279 | 42 | 825 | 562 | 79 | 1.00 | (0.86, 1.15) | 0.948 |
BER | MUTYH | rs3219487 | G | A | 8% | 628 | 112 | 3 | 1240 | 225 | 9 | 0.96 | (0.76, 1.21) | 0.728 |
BER | MUTYH | rs3219484 | G | A | 7% | 638 | 106 | 0 | 1273 | 198 | 6 | 1.01 | (0.79, 1.30) | 0.930 |
BER | MUTYH | rs3219474 | A | G | 8% | 631 | 109 | 4 | 1255 | 212 | 6 | 1.04 | (0.82, 1.32) | 0.747 |
BER | NEIL1 | rs7182283 | G | T | 50% | 185 | 359 | 192 | 349 | 777 | 339 | 1.04 | (0.91, 1.18) | 0.578 |
BER | NEIL1 | rs4462560 | C | G | 26% | 428 | 274 | 41 | 813 | 565 | 99 | 0.91 | (0.78, 1.05) | 0.194 |
BER | NEIL2 | rs4841593 | C | G | 8% | 621 | 120 | 2 | 1256 | 209 | 11 | 1.08 | (0.86, 1.36) | 0.510 |
BER | NEIL2 | rs904009 | A | C | 24% | 434 | 252 | 57 | 851 | 535 | 88 | 1.02 | (0.88, 1.18) | 0.804 |
BER | NEIL2 | rs2010628 | G | T | 23% | 445 | 248 | 51 | 881 | 521 | 75 | 1.03 | (0.89, 1.20) | 0.664 |
BER | NEIL2 | rs8191529 | G | C | 9% | 634 | 105 | 5 | 1229 | 240 | 8 | 0.87 | (0.69, 1.10) | 0.238 |
BER | NEIL2 | rs804267 | A | G | 33% | 333 | 319 | 92 | 669 | 651 | 155 | 1.05 | (0.92, 1.20) | 0.456 |
BER | NEIL2 | rs8191534 | T | A | 23% | 441 | 250 | 53 | 865 | 528 | 82 | 1.01 | (0.88, 1.17) | 0.858 |
BER | NEIL2 | rs8191542 | G | C | 22% | 437 | 260 | 38 | 889 | 503 | 70 | 1.06 | (0.91, 1.24) | 0.422 |
BER | NEIL2 | rs8191589 | T | A | 22% | 443 | 263 | 37 | 889 | 516 | 72 | 1.04 | (0.89, 1.20) | 0.645 |
BER | NEIL2 | rs4840581 | G | A | 45% | 232 | 359 | 153 | 442 | 724 | 309 | 0.96 | (0.85, 1.09) | 0.563 |
BER | NEIL2 | rs4840583 | C | T | 45% | 219 | 367 | 158 | 425 | 771 | 281 | 1.03 | (0.90, 1.17) | 0.687 |
BER | NEIL2 | rs804256 | T | C | 36% | 304 | 338 | 102 | 597 | 695 | 185 | 1.01 | (0.88, 1.15) | 0.914 |
BER | NEIL2 | rs8191604 | A | C | 26% | 409 | 276 | 57 | 807 | 569 | 99 | 1.00 | (0.87, 1.15) | 0.987 |
BER | NEIL2 | rs4840585 | A | C | 8% | 627 | 115 | 2 | 1258 | 208 | 10 | 1.05 | (0.83, 1.32) | 0.700 |
BER | NEIL2 | rs1874546 | C | G | 24% | 456 | 254 | 31 | 859 | 526 | 83 | 0.87 | (0.75, 1.01) | 0.074 |
BER | NEIL2 | rs8191649 | C | T | 22% | 466 | 233 | 45 | 889 | 519 | 69 | 0.96 | (0.83, 1.12) | 0.620 |
BER | NEIL2 | rs6982453 | A | G | 49% | 200 | 389 | 154 | 374 | 755 | 345 | 0.92 | (0.81, 1.04) | 0.189 |
BER | NEIL2 | rs1534862 | G | A | 23% | 454 | 243 | 46 | 864 | 534 | 78 | 0.95 | (0.82, 1.10) | 0.464 |
BER | NEIL2 | rs6997097 | A | G | 7% | 654 | 84 | 4 | 1281 | 186 | 7 | 0.92 | (0.71, 1.19) | 0.514 |
BER | NEIL2 | rs1043180 | G | A | 12% | 575 | 160 | 8 | 1127 | 333 | 17 | 0.94 | (0.77, 1.14) | 0.533 |
BER | NEIL2 | rs2645450 | T | C | 23% | 426 | 273 | 45 | 878 | 531 | 68 | 1.10 | (0.95, 1.28) | 0.187 |
BER | NEIL2 | rs904015 | G | A | 35% | 321 | 327 | 95 | 614 | 678 | 174 | 0.99 | (0.87, 1.13) | 0.877 |
BER | NTHL1 | rs12447809 | G | T | 19% | 474 | 233 | 37 | 960 | 463 | 54 | 1.07 | (0.92, 1.26) | 0.361 |
BER | NTHL1 | rs1132368 | G | A | 4% | 689 | 54 | 1 | 1348 | 128 | 0 | 0.86 | (0.62, 1.20) | 0.379 |
BER | NTHL1 | rs2531213 | A | G | 3% | 697 | 47 | 0 | 1378 | 99 | 0 | 0.93 | (0.65, 1.33) | 0.672 |
BER | NTHL1 | rs3211995 | G | A | 17% | 517 | 205 | 22 | 1009 | 427 | 41 | 0.95 | (0.81, 1.13) | 0.579 |
BER | NTHL1 | rs2516740 | A | C | 23% | 452 | 255 | 37 | 880 | 524 | 73 | 0.96 | (0.83, 1.12) | 0.593 |
BER | NTHL1 | rs2516739 | G | A | 22% | 459 | 248 | 37 | 886 | 517 | 72 | 0.95 | (0.82, 1.10) | 0.495 |
BER | OGG1 | rs159153 | A | G | 29% | 353 | 307 | 84 | 748 | 584 | 140 | 1.11 | (0.97, 1.27) | 0.127 |
BER | OGG1 | rs1052133 | C | G | 23% | 440 | 265 | 39 | 873 | 519 | 85 | 1.00 | (0.86, 1.16) | 0.992 |
BER | OGG1 | rs293795 | A | G | 18% | 498 | 222 | 24 | 990 | 438 | 49 | 0.98 | (0.83, 1.15) | 0.815 |
BER | OGG1 | rs293794 | A | G | 18% | 499 | 221 | 24 | 986 | 439 | 49 | 0.97 | (0.83, 1.14) | 0.736 |
BER | OGG1 | rs293796 | G | A | 8% | 623 | 110 | 8 | 1260 | 207 | 8 | 1.14 | (0.91, 1.43) | 0.253 |
BER | PCNA | rs3729558 | G | C | 47% | 223 | 373 | 148 | 422 | 719 | 335 | 0.92 | (0.81, 1.05) | 0.205 |
BER | PCNA | rs17349 | G | A | 12% | 594 | 140 | 8 | 1147 | 309 | 19 | 0.88 | (0.72, 1.07) | 0.199 |
BER | PCNA | rs25406 | G | A | 40% | 239 | 370 | 135 | 553 | 675 | 249 | 1.14 | (1.01, 1.29) | 0.038 |
BER | PCNA | rs25405 | A | G | 12% | 591 | 141 | 8 | 1145 | 306 | 19 | 0.89 | (0.73, 1.09) | 0.262 |
BER | PCNA | rs4239761 | A | G | 19% | 476 | 233 | 34 | 970 | 439 | 68 | 1.04 | (0.90, 1.22) | 0.587 |
BER | PNKP | rs7257463 | T | A | 34% | 319 | 327 | 98 | 628 | 685 | 164 | 1.04 | (0.92, 1.19) | 0.518 |
BER | PNKP | rs1290646 | G | A | 50% | 188 | 383 | 172 | 373 | 734 | 366 | 0.96 | (0.85, 1.09) | 0.558 |
BER | PNKP | rs3739177 | C | T | 8% | 615 | 124 | 5 | 1259 | 211 | 7 | 1.20 | (0.96, 1.51) | 0.112 |
BER | PNKP | rs2257103 | G | A | 39% | 265 | 362 | 115 | 546 | 699 | 224 | 1.04 | (0.92, 1.19) | 0.519 |
BER | PNKP | rs2353005 | G | A | 16% | 543 | 187 | 14 | 1057 | 379 | 41 | 0.92 | (0.77, 1.10) | 0.356 |
BER | POLB | rs3136711 | T | C | 8% | 627 | 111 | 6 | 1247 | 219 | 11 | 1.03 | (0.82, 1.29) | 0.829 |
BER | POLB | rs2976244 | A | T | 7% | 645 | 95 | 2 | 1288 | 177 | 11 | 0.98 | (0.76, 1.25) | 0.851 |
BER | POLB | rs3136790 | A | C | 11% | 585 | 154 | 5 | 1170 | 286 | 18 | 1.00 | (0.82, 1.22) | 0.991 |
BER | POLB | rs3136797 | C | G | 2% | 716 | 28 | 0 | 1430 | 46 | 1 | 1.15 | (0.72, 1.84) | 0.569 |
BER | POLB | rs2073664 | G | A | 6% | 647 | 89 | 2 | 1288 | 168 | 11 | 0.96 | (0.75, 1.24) | 0.761 |
BER | POLI | rs3730668 | C | A | 41% | 283 | 336 | 116 | 524 | 681 | 254 | 0.91 | (0.80, 1.03) | 0.135 |
BER | POLI | rs476630 | G | A | 29% | 367 | 300 | 77 | 750 | 600 | 126 | 1.08 | (0.95, 1.24) | 0.248 |
BER | POLI | rs686881 | A | G | 6% | 643 | 100 | 1 | 1310 | 161 | 6 | 1.20 | (0.92, 1.54) | 0.173 |
BER | POLI | rs3730814 | C | A | 23% | 431 | 272 | 40 | 886 | 499 | 89 | 1.04 | (0.90, 1.20) | 0.593 |
BER | POLI | rs3218786 | A | G | 3% | 701 | 40 | 2 | 1391 | 82 | 0 | 1.06 | (0.73, 1.53) | 0.771 |
BER | POLI | rs8305 | A | G | 30% | 359 | 315 | 70 | 716 | 630 | 131 | 1.03 | (0.90, 1.18) | 0.673 |
BER | POLI | rs596986 | G | C | 6% | 643 | 100 | 1 | 1310 | 161 | 6 | 1.20 | (0.92, 1.54) | 0.173 |
BER | PPP1R13L | rs6966 | T | A | 16% | 539 | 185 | 20 | 1048 | 377 | 47 | 0.95 | (0.80, 1.12) | 0.524 |
BER | PPP1R13L | rs4803817 | A | G | 23% | 451 | 255 | 36 | 874 | 510 | 88 | 0.94 | (0.81, 1.09) | 0.425 |
BER | PPP1R13L | rs10412761 | A | G | 40% | 282 | 357 | 105 | 541 | 681 | 252 | 0.92 | (0.81, 1.05) | 0.204 |
BER | PPP1R13L | rs1005165 | G | A | 17% | 527 | 194 | 22 | 1016 | 410 | 45 | 0.93 | (0.78, 1.10) | 0.367 |
BER | RAD18 | rs4389469 | C | T | 40% | 282 | 349 | 113 | 547 | 691 | 239 | 0.97 | (0.85, 1.10) | 0.619 |
BER | RAD18 | rs369032 | A | G | 38% | 285 | 357 | 102 | 579 | 674 | 224 | 0.99 | (0.87, 1.13) | 0.915 |
BER | RAD18 | rs2035221 | G | A | 9% | 613 | 123 | 6 | 1227 | 235 | 10 | 1.05 | (0.85, 1.31) | 0.641 |
BER | RAD18 | rs593205 | G | C | 8% | 605 | 136 | 3 | 1251 | 211 | 12 | 1.23 | (0.99, 1.53) | 0.066 |
BER | RAD18 | rs373572 | A | G | 26% | 402 | 283 | 56 | 800 | 571 | 105 | 1.02 | (0.88, 1.17) | 0.805 |
BER | RAD18 | rs13088787 | C | A | 13% | 569 | 165 | 10 | 1127 | 326 | 24 | 0.98 | (0.81, 1.19) | 0.868 |
BER | RAD18 | rs615967 | T | C | 21% | 461 | 253 | 30 | 920 | 480 | 77 | 0.99 | (0.85, 1.15) | 0.850 |
BER | RAD18 | rs604092 | A | G | 18% | 501 | 220 | 22 | 1004 | 414 | 56 | 1.00 | (0.85, 1.18) | 0.962 |
BER | SMUG1 | rs971 | G | A | 34% | 324 | 323 | 93 | 654 | 647 | 172 | 1.03 | (0.90, 1.17) | 0.654 |
BER | SMUG1 | rs3087404 | G | A | 46% | 226 | 358 | 157 | 437 | 714 | 325 | 0.96 | (0.85, 1.09) | 0.573 |
BER | TDG | rs172814 | A | G | 16% | 548 | 186 | 10 | 1052 | 384 | 40 | 0.87 | (0.72, 1.03) | 0.113 |
BER | TDG | rs4135054 | G | A | 11% | 573 | 163 | 8 | 1170 | 291 | 16 | 1.11 | (0.91, 1.35) | 0.290 |
BER | TDG | rs4135061 | A | G | 27% | 404 | 297 | 41 | 788 | 578 | 109 | 0.93 | (0.80, 1.07) | 0.305 |
BER | TDG | rs4135064 | G | A | 9% | 599 | 140 | 4 | 1221 | 246 | 9 | 1.13 | (0.91, 1.40) | 0.274 |
BER | TDG | rs4135081 | A | G | 37% | 273 | 370 | 101 | 579 | 695 | 200 | 1.06 | (0.93, 1.21) | 0.388 |
BER | TDG | rs3751206 | G | A | 7% | 644 | 96 | 2 | 1292 | 174 | 9 | 1.04 | (0.81, 1.34) | 0.735 |
BER | TDG | rs4135087 | G | A | 10% | 610 | 130 | 3 | 1184 | 278 | 13 | 0.87 | (0.70, 1.08) | 0.197 |
BER | TDG | rs167715 | A | G | 11% | 576 | 160 | 8 | 1164 | 294 | 19 | 1.05 | (0.87, 1.28) | 0.598 |
BER | TDG | rs10861152 | G | A | 39% | 291 | 350 | 97 | 538 | 715 | 216 | 0.91 | (0.80, 1.03) | 0.142 |
BER | TDG | rs1866074 | A | G | 51% | 178 | 387 | 178 | 377 | 689 | 409 | 0.96 | (0.85, 1.09) | 0.517 |
BER | TDG | rs4135106 | A | G | 7% | 654 | 86 | 2 | 1282 | 183 | 9 | 0.88 | (0.68, 1.14) | 0.326 |
BER | TDG | rs4135128 | G | C | 9% | 617 | 123 | 3 | 1241 | 218 | 17 | 1.02 | (0.82, 1.27) | 0.849 |
BER | UNG | rs3890995 | A | G | 18% | 491 | 233 | 20 | 986 | 461 | 30 | 1.06 | (0.89, 1.25) | 0.529 |
BER | UNG | rs1018783 | T | A | 16% | 492 | 232 | 20 | 1033 | 403 | 41 | 1.13 | (0.96, 1.33) | 0.152 |
BER | UNG | rs2569987 | A | G | 17% | 501 | 223 | 19 | 1009 | 421 | 45 | 1.01 | (0.86, 1.19) | 0.893 |
BER | UNG | rs246079 | A | G | 42% | 217 | 381 | 145 | 485 | 750 | 241 | 1.15 | (1.01, 1.31) | 0.034 |
BER | UNG | rs34259 | C | G | 20% | 446 | 266 | 30 | 938 | 476 | 62 | 1.10 | (0.94, 1.28) | 0.245 |
BER | XRCC1 | rs25487 | C | T | 37% | 288 | 365 | 91 | 604 | 664 | 209 | 1.00 | (0.88, 1.14) | 0.950 |
BER | XRCC1 | rs25486 | A | G | 37% | 288 | 365 | 90 | 599 | 664 | 209 | 1.00 | (0.87, 1.13) | 0.946 |
BER | XRCC1 | rs25489 | C | T | 4% | 685 | 57 | 2 | 1348 | 128 | 1 | 0.94 | (0.69, 1.29) | 0.701 |
BER | XRCC1 | rs1799782 | G | A | 5% | 661 | 82 | 1 | 1320 | 153 | 4 | 1.05 | (0.80, 1.38) | 0.733 |
BER | XRCC1 | rs3213344 | G | C | 5% | 661 | 80 | 1 | 1320 | 150 | 5 | 1.03 | (0.78, 1.35) | 0.844 |
BER | XRCC1 | rs3213334 | G | A | 24% | 434 | 266 | 44 | 866 | 509 | 102 | 0.99 | (0.85, 1.14) | 0.851 |
BER | XRCC1 | rs2023614 | G | C | 8% | 633 | 107 | 1 | 1249 | 220 | 6 | 0.92 | (0.72, 1.18) | 0.513 |
BER | XRCC1 | rs2854510 | A | G | 21% | 470 | 245 | 28 | 936 | 461 | 78 | 0.96 | (0.82, 1.12) | 0.586 |
BER | XRCC1 | rs2854509 | C | A | 22% | 456 | 242 | 42 | 914 | 480 | 80 | 1.02 | (0.88, 1.18) | 0.793 |
BER | XRCC1 | rs3213266 | G | A | 8% | 630 | 111 | 2 | 1238 | 232 | 7 | 0.92 | (0.73, 1.16) | 0.477 |
BER | XRCC1 | rs3213255 | A | G | 43.0% | 242 | 375 | 126 | 491 | 712 | 274 | 0.98 | (0.86, 1.11) | 0.759 |
HRb | XRCC2 | rs3218536 | G | A | 7% | 631 | 109 | 2 | 1262 | 210 | 5 | 1.05 | (0.82, 1.33) | 0.715 |
HR | XRCC2 | rs6964582 | G | C | 4% | 663 | 77 | 2 | 1349 | 124 | 2 | 1.26 | (0.95, 1.68) | 0.114 |
HR | XRCC2 | rs3218438 | T | C | 9% | 598 | 138 | 8 | 1215 | 247 | 15 | 1.10 | (0.89, 1.35) | 0.378 |
HR | XRCC2 | rs3218408 | A | C | 22% | 430 | 278 | 35 | 901 | 494 | 78 | 1.08 | (0.93, 1.25) | 0.316 |
HR | XRCC2 | rs3218373 | C | A | 9% | 617 | 119 | 7 | 1230 | 235 | 10 | 1.03 | (0.82, 1.28) | 0.808 |
HR | XRCC2 | rs2040639 | G | A | 48% | 212 | 366 | 166 | 387 | 767 | 322 | 0.97 | (0.85, 1.10) | 0.625 |
HR | XRCC3 | rs861539 | G | A | 39% | 307 | 333 | 104 | 536 | 724 | 217 | 0.89 | (0.78, 1.01) | 0.067 |
HR | XRCC3 | rs3212102 | C | T | 3% | 711 | 33 | 0 | 1402 | 75 | 0 | 0.88 | (0.58, 1.33) | 0.539 |
HR | XRCC3 | rs3212090 | G | A | 32% | 311 | 354 | 78 | 694 | 628 | 151 | 1.12 | (0.98, 1.28) | 0.087 |
HR | XRCC3 | rs3212079 | G | A | 7% | 644 | 99 | 1 | 1271 | 191 | 12 | 0.93 | (0.73, 1.19) | 0.585 |
HR | XRCC3 | rs861530 | C | T | 29% | 362 | 328 | 54 | 733 | 625 | 119 | 1.01 | (0.88, 1.17) | 0.839 |
HR | XRCC3 | rs1799794 | A | G | 18% | 477 | 245 | 22 | 980 | 442 | 48 | 1.08 | (0.92, 1.27) | 0.340 |
HR | XRCC3 | rs861528 | G | A | 26% | 427 | 267 | 45 | 807 | 550 | 107 | 0.90 | (0.78, 1.04) | 0.157 |
Among all cases and controls; AA, homozygous major allele; Aa, heterozygous; aa, homozygous minor allele; numbers do not sum to total due to missing.
MMR, mismatch repair; BER, base excision repair; HR, homologous recombination.
MAF, minor allele frequency.