Table 1.
Crystallography data and refinement statistics
Crystal form: | Low-formate | High-formate | |
---|---|---|---|
Crystal parameters: | |||
Space group | P212121 | P212121 | |
Cell dimensions | |||
a, b, c (Å) | 99.83, 100.90 , 192.34 | 99.78, 100.46 , 192.96 | |
α, β, γ (°) | 90, 90, 90 | 90, 90, 90 | |
Data quality: | |||
Resolution (Å) | 50 – 2.13 | 50 – 2.5 | |
Rsym | 0.11 (0.72) | 0.17 (0.63) | |
Mean redundancy | 7.2 | 7.3 | |
Completeness | 94.60% | 98.60% | |
Mean I/σ(I) | 12.43 (2.1) | 14.6 (2.6) | |
Phasing Statistics: | |||
Anomalous signal (Å) | 5.4 | ||
Mean figure of merit | 0.52 | ||
Refinement: | |||
Resolution (Å) | 50 – 2.13 | 50 – 2.5 | |
No. reflections | 102,406 | 62,189 | |
Rwork/ Rfree | 0.18 / 0.21 | 0.17 / 0.22 | |
Average B-factor (Å2) | |||
Protein | 68.91 | 55.76 | |
Formate, octylglucoside | 99.94 | 81.70 | |
Water | 58.46 | 45.64 | |
R.M.S deviations | |||
Bond lengths (Å) | 0.008 | 0.008 | |
Bond angles (°) | 0.995 | 1.026 | |
Model Contents: | |||
Monomer A: 256 | Monomer A: 257 | ||
Monomer B: 254 | Monomer B: 255 | ||
Protein residues | Monomer C: 259 | Monomer C: 254 | |
Monomer D: 251 | Monomer D: 254 | ||
Monomer E: 255 | Monomer E: 256 | ||
Ligands | 16 β-OG | 13 β-OG, 51 formate * | |
Water molecules | 346 | 227 |
Notes:
Rsym = S|Ij – <Ij>|/SIj, where <Ij> is the averaged intensity for symmetry related reflections. Redundancy represents the ratio between the number of measurements and the number of unique reflections. R factor = S|F(obs) – F(cal)|/SF(obs); 5% of the data that were excluded from the refinement were to calculate Rfree. The average B factor was calculated for all non-hydrogen atoms. r.m.s.d. of bond is the root-mean-square deviation of the bond angle and length. Numbers in parentheses are statistics of the highest resolution shell.
While two formate ions are found at the selectivity filter of Monomer E, one is found at that of Monomer D. The rest of the formate ions are found on the protein surface.