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. 2013 Apr 1;201(1):145–163. doi: 10.1083/jcb.201210019

Table 3.

smt3allR tiling array gene expression analysis

Category Gene log2 (fold change) Gene log2 (fold change) Gene log2 (fold change) Gene log2 (fold change) Gene log2 (fold change) Gene log2 (fold change) Gene log2 (fold change)
Nutrient/stress response
HSP12 2.912 HSP104 1.229 ECM4 0.954 SPG4 0.765 HMX1 0.606 DDR2 2.872 ALD3 1.200
MOH1 0.933 TPS2 0.756 YMR090W 0.602 HSP26 2.805 SOL4 1.159 HOR2 0.907 DUR1,2 0.753
MSN4 0.602 HUG1 2.404 CRG1 1.139 USV1 0.898 HSP31 0.746 PHO12 –0.602 TMA10 1.817
ADR1 1.133 TMA17 0.896 RNY1 0.741 PHO11 –0.604 MSC1 1.803 NTH1 1.131 UBC5 0.893
YOR052C 0.731 SPL2 –0.660 TSL1 1.793 ATG8 1.129 HOR7 0.882 YJL144W 0.711 ZRT1 –0.760
GAD1 1.753 CTT1 1.104 PUT1 0.874 AHA1 0.691 RSN1 –0.805 HSP42 1.664 FRE7 1.045
SOM1 0.860 YNR014W 0.677 AAH1 –0.805 GLK1 1.635 PRB1 1.037 ATH1 0.852 YNL134C 0.676
PHM6 –0.815 TFS1 1.522 NCE103 1.036 SSA3 0.833 GRX1 0.664 HMS2 –0.832 PNC1 1.470
GTT1 1.022 IGD1 0.826 EDC2 0.637 SSA4 1.465 SSE2 1.009 YJR096W 0.811 SPI1 0.631
GRE1 1.394 GAC1 1.004 TPS1 0.808 RAD51 0.630 GCY1 1.382 PLM2 0.990 GPD1 0.802
RCN2 0.630 HSP78 1.338 MCR1 0.980 GRE3 0.800 YAP6 0.628 PGM2 1.317 YDL124W 0.968
CAR2 0.796 PEP4 0.620 XBP1 1.304 PRX1 0.966 PUT4 0.784 YOR289W 0.614 YDR034W-B 1.255
SDS24 0.962 YKL151C 0.771 DAN4 0.609
Mating and sporulation
AGA2 2.532 GPG1 1.320 CWP1 1.064 EMI2 0.694 TPK1 0.606 MFA1 1.555 PRM1 1.227
BAR1 1.034 GSM1 0.678 PST2 0.604 HBT1 1.552 UBI4 1.223 PRM6 0.931 SPO12 0.651
TCB2 –0.726 FIG1 1.450 FIG2 1.195 RMD5 0.784 FUS1 0.642 PRM7 –0.945
GSC2 1.377 AFR1 1.145 YOR338W 0.755 AGA1 0.641 RIM4 1.363 PRM2 1.108 FUS2 0.737
PTP2 0.628 MFA2 1.345 STE2 1.102 KAR4 0.712 SPS100 0.616
Carbohydrate metabolism
GPH1 2.447 HXT6 1.136 GND2 0.789 PFK26 0.679 HXK1 1.863 HXT7 1.130 YBR056W 0.723
YLR345W 0.673 AMS1 1.699 GSY2 1.056 HXT5 0.720 RKI1 –0.616 NQM1 1.423 PIG1 0.914
CIT1 0.717 HXT1 –0.710 GPM2 1.278 GSY1 0.868 UGP1 0.695 GDB1 1.252 GIP2 0.842
PYK2 0.695 GLC3 1.192 PCK1 0.789 GUT2 0.689
Cell wall
YGP1 2.467 KDX1 1.176 YPS6 1.017 DSE1 –0.650 EGT2 –0.718 YPS5 1.204 PRM5 1.103
PIR3 0.988 SUN4 –0.685 PRY3 –1.042
Autophagy
LAP4 1.229 DCS1 0.981 ATG34 0.878 PAI3 0.738 DCS2 1.025 ALD2 0.892 ATG33 0.743
ATG19 0.732
Mitochondrial
FMP16 1.902 CYC7 1.036 AIM17 0.984 MRP8 0.702 COX5B 0.656 CTP1 –0.806 STF1 1.622
INH1 0.993 OM45 0.918 UIP4 0.699 MPM1 0.644 ALD4 1.305 FMP33 0.986 YNL200C 0.892
GOR1 0.664 SDH2 0.633
Other
YPR160W-A 2.593 YDR042C 1.159 VMR1 0.901 YMR181C 0.747 PIC2 0.641 SFG1 –0.605 YGL101W –0.823
YIL082W 2.021 YJL133C-A 1.145 LEE1 0.901 YLR312C 0.732 YNL058C 0.637 LIA1 –0.614 YBR191W-A –0.862
RTN2 1.860 ROM1 1.143 YOR343C 0.867 YBR139W 0.726 YPL088W 0.632 BSC1 –0.615 YMR317W –0.907
YMR196W 1.797 BOP2 1.142 PET10 0.858 YOR192C-C 0.709 YHR052W-A 0.624 NIP7 –0.629 PLB2 –0.923
NCA3 1.724 CRG1 1.139 YLR307C-A 0.822 YER053C-A 0.692 YPR145C-A 0.623 LYS1 –0.633 YMR046W-A –1.003
RNR3 1.683 RTS3 1.115 YLR108C 0.798 COS12 0.690 YCL076W 0.622 HTB2 –0.654 YOL014W –1.206
PHM8 1.500 GSP2 1.097 PRY1 0.787 BNA2 0.685 PEX27 0.617 YBL029W –0.688 YFR052C-A 1.498
YKR011C 1.053 YDL247W-A 0.783 GAP1 0.684 YLR042C 0.617 YPR002C-A –0.708 YNR034W-A 1.365 PBI2 0.993
YBR201C-A 0.780 YOR114W 0.673 VPS73 0.614 ADE17 –0.712 RTC3 1.332 SRL3 0.987 CUR1 0.769
YNL115C 0.670 REC104 0.611 HTA2 –0.719 YHR138C 1.263 ECL1 0.986 YCL021W-A 0.767 GGA1 0.663
YHR007C-A 0.608 YNL217W –0.729 YLR149C 1.179 YCL042W 0.954 YDR379C-A 0.758 HER1 0.657 RGC1 0.603
ARG8 –0.764 YBR085C-A 1.178 BTN2 0.926 YCL049C 0.758 YBR053C 0.652 YHR177W 0.602 YDL038C –0.799

High-resolution gene expression analysis of the smt3allR mutant revealed that 261 genes were over- or underexpressed as compared to parental cells.