Table 1.
BPMs where 1 module includes the COG complex
| BPM | Selected enriched GO terms |
|---|---|
|
COG6 COG5 COG8 PIB2 COG7 |
intra-Golgi vesicle-mediatedtransport (4/5) |
| |
protein targeting to vacuole (4/5) |
|
ARL1 VPS35 GET3 ARL3 |
protein transport (9/10) |
|
SYS1 GOT1 PEP8 SFT2 |
Golgi apparatus (7/10) |
|
MNN1 VPS17 |
endosome transport (6/10) |
| |
vesicle-mediated transport (9/10) |
|
COG6 RIC1 MRP8 COG5 COG7 SNC1 COG8 GCS1 PIB2 SRO7 |
intra-Golgi vesicle-mediatedtransport (4/10)Golgi vesicle transport (7/10) |
| |
vesicle-mediated transport (9/10) |
|
ARL1 VPS35 GET3 ARL3 SYS1 SRO77 PEP8 SFT2 GOT1 SNC2 VPS13 VPS17 |
post-Golgi vesicle-mediatedtransport (7/12)Golgi vesicle transport (8/12) |
| |
establishment of proteinlocalization (10/12) |
| |
retromer complex (3/12) |
|
COG6 YPT7 COG7 MVB12 YPT52 COG5 CCZ1 ARF3 COG8 ENT3 YPT53 |
intra-Golgi vesicle-mediatedtransport (4/11)establishment of proteinlocalization to vacuole (8/11) |
| |
vacuolar transport (10/11) |
| |
GTP binding (4/11) |
|
ARL1 VPS35 GET3 ARL3 |
endosome transport (7/12) |
|
YPT31 BOR1 SYS1 GOT1 |
Golgi vesicle transport (7/12) |
|
PEP8 SFT2 VPS17 YOL019W |
retrograde transport, endosome to Golgi (4/12) |
| |
establishment of proteinlocalization (11/12) |
| |
retromer complex (3/12) |
|
COG6 COG5 COG8 COG7 |
intra-Golgi vesicle-mediatedtransport (4/4) |
| |
protein targeting to vacuole (4/4) |
| |
establishment of prtoeinlocalization (4/4) |
| ARL1 VPS35 GSF2 GET3 ARE2 |
retromer complex (3/10) |
| SFT2 GOT1 SCS7 PEP8 VPS17 | |
|
COG6 RIC1 MRP8 EIS1 ARF1 COG5 PIB2 COG7 COG8 GCS1 |
intra-Golgi vesicle mediatedtransport (5/10) |
| |
Golgi vesicle transport (6/10) |
|
ARL1 VPS35 GSF2 ARL3 SYS1 APL5 GET3 PEP8 SFT2 GOT1 ARE1 SCS7 VPS13 VPS17 |
protein transport (11/14)Golgi apparatus (8/14)endosome transport (7/14)Golgi vesicle transport (7/14) |
| |
establishment of proteinlocalization (11/14) |
|
COG6 RIC1 MRP8 VPS41 EIS1ARF1 ARF3 COG5 YPT52 COG7 COG8 GCS1 SNC1 PIB2 ENT3 |
intra-Golgi vesicle-mediatedtransport (5/15)Golgi vesicle transport (8/15)vesicle-mediated transport (13/15) |
| |
establishment of proteinlocalization (11/15) |
|
ARL1 VPS35 GSF2 ARL3 |
endosome transport (9/17) |
|
YPT31 SYS1 VPS17 GET3 |
Golgi vesicle transport (8/17) |
|
PEP8 SFT2 GOT1 SNC2 SCS7VPS13 MNN1 VPS29 ARE2 |
retrograde transport, endosome to Golgi (5/17) |
| |
establishment of proteinlocalization (12/17) |
| retromer complex (3/17) | |
This table lists several BPMs generated where one module contains genes in the COG complex. Selected enriched GO terms are included, and bolded genes have been enriched for at least one of the GO terms listed. For complete GO enrichment results, please see the Additional file 1.