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. 2013 Jan 16;7:6. doi: 10.1186/1752-0509-7-6

Table 1.

Parameters used in the deterministic and stochastic simulations

Parameter Description Value Reference
Kd1
dissociation constant of LuxR to A
100 nM
[41]
k1
unbinding rate of LuxR to A
10 min−1
estimated
Kd2
dissociation constant of LuxR·AI dimerization
20 nM
fitted
K2
dissociation rate of dimer (LuxR·AI)2
1 min−1
estimated
kA
synthesis rate of A by LuxI
0.04 min−1
fitted
Kdlux
dissociation constant of (LuxR·AI)2 to the lux promoter
200 nM
fitted
klux
dissociation rate of (LuxR·AI)2 to the lux promoter
10 min−1
estimated
b
burst size
20
[38]
kR
transcription rate of luxR
200/bmin−1
fitted
kI
transcription rate of luxI
50/bmin−1
fitted
pR
translation rate of luxR mRNA
bdmRmin−1
 
pI
translation rate of luxI mRNA
bdmImin−1
 
αR
ratio between unactivated and activated rate of expression of luxR
0.001
fitted
αI
ratio between unactivated and activated rate of expression of luxI
0.01
fitted
dA
degradation rate of A (same inside and outside the cell)
0.001 min−1
[42]
dC2
degradation rate of (LuxR·AI)2
0.002 min−1
estimated
dC
degradation rate of LuxR·AI
0.002 min−1
estimated
dR
degradation rate of LuxR
0.002 min−1
estimated
dI
degradation rate of LuxI
0.01 min−1
estimated
dmR
degradation rate of luxR mRNA
0.347 min−1
[43]
dmI
degradation rate of luxI mRNA
0.347 min−1
[43]
D
effective diffusion rate of A through the cell membrane
10 min−1
[44]
τ
cell cycle duration (doubling time) in RM/succinate at 30 C
45 min
[10]
λ
relative weight between the det./sto. components of the cell cycle
0.8
[33,45]
V0
cell volume at the beginning of cell cycle
1.5 μm3
[46]
Vtot total cell culture volume 2·10−4μl