Table 1. Sequences of primers developed for the Duplex SmartAmp method.
Primer | 5′-DNA sequence-3′ |
TP | CGCGGGAGGTC AGCGTTCACACTAGTGACCC |
FP | ACCTTCTATACCCTCAGAAGGT CGGGAGTTCAGGGTAAAGGT |
BP | TCGCAGGTGCCTGTC |
nBP | GGCTGCGGGGCC |
OP | CAATCCCGCCCAGACTAC |
oBP (WT) | 5′- CGGGGCCGCZTC - 3′ (Z : Thymine labeled with thiazole pink) |
oBP(SNP) | 5′- CGGGGUCCGCTGC - 3′ (U : Thymine labeled with thiazole orange) |
TP: The turn-back region is underlined.
FP: The folding region is underlined.
“Z” and “U” indicate thiazole pink- and thiazole orange-labeled thymines in oBP, respectively.