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. 2013 Apr 2;8(4):e59683. doi: 10.1371/journal.pone.0059683

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© 2013 Singhal et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Time traces of pair-wise centre of mass distances between: (A) Head and Arm1, and (B) N-terminal and Arm2, show that in nearly all the trajectories the respective separation between pairs of domains is consistently reduced; (C) Logarithmic probability histogram plot for pair-wise COM distances – HA1 vs NtA2– shows three regions corresponding to: initial extended structure (I), semi-collapsed collapsed (II), and the fully collapsed. Contours are apart. Note that this plot does not represent an equilibrium free energy landscape, as the simulations are not converged.

Inline graphic — Time traces of pair-wise centre of mass distances between: (A) Head and Arm1, and (B) N-terminal and Arm2, show that in nearly all the trajectories the respective separation between pairs of domains is consistently reduced; (C) Logarithmic probability histogram plot for pair-wise COM distances – HA1 vs NtA2– shows three regions corresponding to: initial extended structure (I), semi-collapsed collapsed (II), and the fully collapsed. Contours are apart. Note that this plot does not represent an equilibrium free energy landscape, as the simulations are not converged.