Our previously corroborated model of the mitochondrial Ca2+ dynamics is updated with our new transporter models for the CU, RaM, NCE, a new model of CHE and a model of the Ca2+ sequestration system. The model implicitly includes the binding of Ca2+ to mobile and immobile buffers and the formation of ACP. The expression “c+ + L− ↔ cL” represents cation-anion complexation. In the mitochondrial matrix, the anions include ATP, ADP and Pi. In the extra-mitochondrial space, the anions are ATP, ADP, Pi and EGTA.