Table 2.
The genomic prediction of N. lugens Toll family
| Predicted gene | GenBank ID | Locus | Size (aa) | Exon | Orientation | UTR | LRR region |
Transmemebrane and LIR |
Best match | Similarity | Mw (KDa) | pI |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Toll-1 |
KC355234 |
scaffold1767 |
1156 |
6 |
- |
no |
14 |
have |
P. h. corporis |
61% |
131.3 |
6.16 |
|
Toll-6 |
KC355235 |
scaffold1818 |
1254 |
2 |
- |
no |
21 |
have |
T. castaneum |
85% |
142.5 |
5.86 |
|
Toll-7 |
KC355236 |
scaffold1910 |
1325 |
1 |
+ |
no |
21 |
have |
P. h. corporis |
79% |
150.8 |
6.06 |
|
Toll-8 |
KC355237 |
scaffold90 |
1296 |
3 |
+ |
no |
21 |
have |
P. h. corporis |
81% |
147.7 |
5.48 |
|
Toll-10 |
KC355238 |
scaffold569 |
1302 |
1 |
+ |
no |
23 |
have |
P. h. corporis |
73% |
146.4 |
5.57 |
| Toll-13 | KC355193 | scaffold2123 | 691 | 2 | - | have | 14 | no | A. mellifera | 67% | 77.13 | 5.22 |
The genomic organization of exons and introns of the genes for pattern recognition proteins is predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). LRR: leucine-rich repeats; TIR: Toll-interleukin homolog domain. Molecular weight (Mw) and isoelectric point (pI) are analyzed using Compute pI/MW tool (http://web.expasy.org/compute_pi/). P. h. corporis, Pediculus humanus corporis; T. castaneum,Tribolium castaneum; A. mellifera, Apis mellifera.